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Sample GSM1071411 Query DataSets for GSM1071411
Status Public on Dec 31, 2013
Title NET-5 [miRNA]
Sample type RNA
Source name neuroendocrine tumor
Organism Homo sapiens
Characteristics gender: male
age: 75
tissue: neuroendocrine tumor (NET)
Extracted molecule total RNA
Extraction protocol Total RNA was obtained from each independent tissue of patient and extracted using TRIzol Reagent (Invitrogen).
Label Cy3-pCp
Label protocol 100ng total RNA was dephosphorylated at the presence of calf intestine alkaline phsphatase, then a Cy3-pCp molecule was then ligated to the 3' end of the RNA molecule according to Agilent miRNA protocol version 1.0
Hybridization protocol Human microRNA Microarray Kit (Agilent Technologies) according to manufacture’s protocol. (
Scan protocol Scanned on an Agilent C scanner. Images were quantified using Agilent Feature Extraction Software ( v
Description E-5
Data processing Raw data were extracted using the Agilent Feature Extraction Software (v and then processed as published previously <Processing of Agilent microRNA array data, BMC RES NOTES,2010>
Submission date Jan 28, 2013
Last update date Dec 31, 2013
Contact name minhee park
Organization name student
Street address shinchondong
City seoul
ZIP/Postal code 120-752
Country South Korea
Platform ID GPL15159
Series (2)
GSE43796 microRNA expression of pancreatic tumors
GSE43797 Characterization of mRNA and microRNA expression profiles in solid-pseudopapillary neoplasm of pancreas, ductal adenocarcinoma and pancreatic neuroendocrine tumors

Data table header descriptions
VALUE The value was log2 transformed and quantile normalized

Data table
A_25_P00010019 5.701700656
A_25_P00010020 5.618577942
A_25_P00010021 5.600264393
A_25_P00010023 5.59601526
A_25_P00010041 5.608728285
A_25_P00010042 5.541870972
A_25_P00010043 5.547732277
A_25_P00010044 5.396243256
A_25_P00010047 9.757590615
A_25_P00010048 8.172371894
A_25_P00010053 14.42608591
A_25_P00010054 12.77491986
A_25_P00010062 5.989892006
A_25_P00010063 5.732845053
A_25_P00010070 12.3803549
A_25_P00010071 11.95619047
A_25_P00010072 11.66358898
A_25_P00010073 9.68770171
A_25_P00010078 6.580670652
A_25_P00010079 5.999334329

Total number of rows: 3523

Table truncated, full table size 92 Kbytes.

Supplementary file Size Download File type/resource
GSM1071411_E-5.txt.gz 3.1 Mb (ftp)(http) TXT
Processed data included within Sample table

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