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Sample GSM1071410 Query DataSets for GSM1071410
Status Public on Dec 31, 2013
Title NET-4 [miRNA]
Sample type RNA
Source name neuroendocrine tumor
Organism Homo sapiens
Characteristics gender: female
age: 51
tissue: neuroendocrine tumor (NET)
Extracted molecule total RNA
Extraction protocol Total RNA was obtained from each independent tissue of patient and extracted using TRIzol Reagent (Invitrogen).
Label Cy3-pCp
Label protocol 100ng total RNA was dephosphorylated at the presence of calf intestine alkaline phsphatase, then a Cy3-pCp molecule was then ligated to the 3' end of the RNA molecule according to Agilent miRNA protocol version 1.0
Hybridization protocol Human microRNA Microarray Kit (Agilent Technologies) according to manufacture’s protocol. (
Scan protocol Scanned on an Agilent C scanner. Images were quantified using Agilent Feature Extraction Software ( v
Description E-4
Data processing Raw data were extracted using the Agilent Feature Extraction Software (v and then processed as published previously <Processing of Agilent microRNA array data, BMC RES NOTES,2010>
Submission date Jan 28, 2013
Last update date Dec 31, 2013
Contact name minhee park
Organization name student
Street address shinchondong
City seoul
ZIP/Postal code 120-752
Country South Korea
Platform ID GPL15159
Series (2)
GSE43796 microRNA expression of pancreatic tumors
GSE43797 Characterization of mRNA and microRNA expression profiles in solid-pseudopapillary neoplasm of pancreas, ductal adenocarcinoma and pancreatic neuroendocrine tumors

Data table header descriptions
VALUE The value was log2 transformed and quantile normalized

Data table
A_25_P00010019 7.745602713
A_25_P00010020 6.614525692
A_25_P00010021 5.920374954
A_25_P00010023 7.151896117
A_25_P00010041 5.565517186
A_25_P00010042 5.554619352
A_25_P00010043 5.461104206
A_25_P00010044 5.460445268
A_25_P00010047 11.13843851
A_25_P00010048 9.721384333
A_25_P00010053 14.97874561
A_25_P00010054 12.22353413
A_25_P00010062 7.700202731
A_25_P00010063 6.209177605
A_25_P00010070 13.43846347
A_25_P00010071 12.78787218
A_25_P00010072 12.30157387
A_25_P00010073 10.56826506
A_25_P00010078 7.155389332
A_25_P00010079 6.154903363

Total number of rows: 3523

Table truncated, full table size 92 Kbytes.

Supplementary file Size Download File type/resource
GSM1071410_E-4.txt.gz 3.2 Mb (ftp)(http) TXT
Processed data included within Sample table

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