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Sample GSM1071406 Query DataSets for GSM1071406
Status Public on Dec 31, 2013
Title PCA-6 [miRNA]
Sample type RNA
Source name ductal adenocarcinoma
Organism Homo sapiens
Characteristics gender: male
age: 50
tissue: ductal adenocarcinoma (PCA)
Extracted molecule total RNA
Extraction protocol Total RNA was obtained from each independent tissue of patient and extracted using TRIzol Reagent (Invitrogen).
Label Cy3-pCp
Label protocol 100ng total RNA was dephosphorylated at the presence of calf intestine alkaline phsphatase, then a Cy3-pCp molecule was then ligated to the 3' end of the RNA molecule according to Agilent miRNA protocol version 1.0
Hybridization protocol Human microRNA Microarray Kit (Agilent Technologies) according to manufacture’s protocol. (
Scan protocol Scanned on an Agilent C scanner. Images were quantified using Agilent Feature Extraction Software ( v
Description A-6
Data processing Raw data were extracted using the Agilent Feature Extraction Software (v and then processed as published previously <Processing of Agilent microRNA array data, BMC RES NOTES,2010>
Submission date Jan 28, 2013
Last update date Dec 31, 2013
Contact name minhee park
Organization name student
Street address shinchondong
City seoul
ZIP/Postal code 120-752
Country South Korea
Platform ID GPL15159
Series (2)
GSE43796 microRNA expression of pancreatic tumors
GSE43797 Characterization of mRNA and microRNA expression profiles in solid-pseudopapillary neoplasm of pancreas, ductal adenocarcinoma and pancreatic neuroendocrine tumors

Data table header descriptions
VALUE The value was log2 transformed and quantile normalized

Data table
A_25_P00010019 5.651834507
A_25_P00010020 5.687049081
A_25_P00010021 5.570776965
A_25_P00010023 5.641767889
A_25_P00010041 5.627943234
A_25_P00010042 5.563844538
A_25_P00010043 5.552382048
A_25_P00010044 5.609164791
A_25_P00010047 8.874172462
A_25_P00010048 6.818711478
A_25_P00010053 12.93160804
A_25_P00010054 10.04137748
A_25_P00010062 6.053464805
A_25_P00010063 5.6521497
A_25_P00010070 14.1079056
A_25_P00010071 13.35334666
A_25_P00010072 12.66517839
A_25_P00010073 9.756879885
A_25_P00010078 8.16572773
A_25_P00010079 6.538198266

Total number of rows: 3523

Table truncated, full table size 92 Kbytes.

Supplementary file Size Download File type/resource
GSM1071406_A-6.txt.gz 3.0 Mb (ftp)(http) TXT
Processed data included within Sample table

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