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Sample GSM1071403 Query DataSets for GSM1071403
Status Public on Dec 31, 2013
Title PCA-3 [miRNA]
Sample type RNA
Source name ductal adenocarcinoma
Organism Homo sapiens
Characteristics gender: male
age: 64
tissue: ductal adenocarcinoma (PCA)
Extracted molecule total RNA
Extraction protocol Total RNA was obtained from each independent tissue of patient and extracted using TRIzol Reagent (Invitrogen).
Label Cy3-pCp
Label protocol 100ng total RNA was dephosphorylated at the presence of calf intestine alkaline phsphatase, then a Cy3-pCp molecule was then ligated to the 3' end of the RNA molecule according to Agilent miRNA protocol version 1.0
Hybridization protocol Human microRNA Microarray Kit (Agilent Technologies) according to manufacture’s protocol. (
Scan protocol Scanned on an Agilent C scanner. Images were quantified using Agilent Feature Extraction Software ( v
Description A-3
Data processing Raw data were extracted using the Agilent Feature Extraction Software (v and then processed as published previously <Processing of Agilent microRNA array data, BMC RES NOTES,2010>
Submission date Jan 28, 2013
Last update date Dec 31, 2013
Contact name minhee park
Organization name student
Street address shinchondong
City seoul
ZIP/Postal code 120-752
Country South Korea
Platform ID GPL15159
Series (2)
GSE43796 microRNA expression of pancreatic tumors
GSE43797 Characterization of mRNA and microRNA expression profiles in solid-pseudopapillary neoplasm of pancreas, ductal adenocarcinoma and pancreatic neuroendocrine tumors

Data table header descriptions
VALUE The value was log2 transformed and quantile normalized

Data table
A_25_P00010019 5.754857722
A_25_P00010020 5.70954587
A_25_P00010021 5.555054218
A_25_P00010023 5.664888592
A_25_P00010041 5.643330769
A_25_P00010042 5.541413925
A_25_P00010043 5.615857251
A_25_P00010044 5.453725161
A_25_P00010047 8.224664643
A_25_P00010048 6.566525258
A_25_P00010053 11.87768965
A_25_P00010054 8.798819148
A_25_P00010062 6.259931455
A_25_P00010063 5.678368532
A_25_P00010070 14.8467101
A_25_P00010071 14.32578573
A_25_P00010072 13.47689404
A_25_P00010073 10.62940417
A_25_P00010078 9.044027203
A_25_P00010079 7.120345421

Total number of rows: 3523

Table truncated, full table size 92 Kbytes.

Supplementary file Size Download File type/resource
GSM1071403_A-3.txt.gz 3.1 Mb (ftp)(http) TXT
Processed data included within Sample table

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