GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
Sample GSM1071401 Query DataSets for GSM1071401
Status Public on Dec 31, 2013
Title PCA-1 [miRNA]
Sample type RNA
Source name ductal adenocarcinoma
Organism Homo sapiens
Characteristics gender: female
age: 64
tissue: ductal adenocarcinoma (PCA)
Extracted molecule total RNA
Extraction protocol Total RNA was obtained from each independent tissue of patient and extracted using TRIzol Reagent (Invitrogen).
Label Cy3-pCp
Label protocol 100ng total RNA was dephosphorylated at the presence of calf intestine alkaline phsphatase, then a Cy3-pCp molecule was then ligated to the 3' end of the RNA molecule according to Agilent miRNA protocol version 1.0
Hybridization protocol Human microRNA Microarray Kit (Agilent Technologies) according to manufacture’s protocol. (
Scan protocol Scanned on an Agilent C scanner. Images were quantified using Agilent Feature Extraction Software ( v
Description A-1
Data processing Raw data were extracted using the Agilent Feature Extraction Software (v and then processed as published previously <Processing of Agilent microRNA array data, BMC RES NOTES,2010>
Submission date Jan 28, 2013
Last update date Dec 31, 2013
Contact name minhee park
Organization name student
Street address shinchondong
City seoul
ZIP/Postal code 120-752
Country South Korea
Platform ID GPL15159
Series (2)
GSE43796 microRNA expression of pancreatic tumors
GSE43797 Characterization of mRNA and microRNA expression profiles in solid-pseudopapillary neoplasm of pancreas, ductal adenocarcinoma and pancreatic neuroendocrine tumors

Data table header descriptions
VALUE The value was log2 transformed and quantile normalized

Data table
A_25_P00010019 5.814936412
A_25_P00010020 5.696857208
A_25_P00010021 5.687808153
A_25_P00010023 5.623785555
A_25_P00010041 5.683472059
A_25_P00010042 5.563640526
A_25_P00010043 5.573036844
A_25_P00010044 5.460581556
A_25_P00010047 9.664099214
A_25_P00010048 7.645851089
A_25_P00010053 12.95951909
A_25_P00010054 10.1570321
A_25_P00010062 5.989833917
A_25_P00010063 5.639859791
A_25_P00010070 13.53741883
A_25_P00010071 12.67472565
A_25_P00010072 12.24093955
A_25_P00010073 9.950788335
A_25_P00010078 11.64802702
A_25_P00010079 9.643866963

Total number of rows: 3523

Table truncated, full table size 92 Kbytes.

Supplementary file Size Download File type/resource
GSM1071401_A-1.txt.gz 3.0 Mb (ftp)(http) TXT
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap