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Sample GSM1071397 Query DataSets for GSM1071397
Status Public on Dec 31, 2013
Title SPN-11 [miRNA]
Sample type RNA
 
Source name solid-pseudopapillary neoplasm
Organism Homo sapiens
Characteristics gender: female
age: 50
tissue: Solid-pseudopapillary neoplasm of pancreas (SPN)
Extracted molecule total RNA
Extraction protocol Total RNA was obtained from each independent tissue of patient and extracted using TRIzol Reagent (Invitrogen).
Label Cy3-pCp
Label protocol 100ng total RNA was dephosphorylated at the presence of calf intestine alkaline phsphatase, then a Cy3-pCp molecule was then ligated to the 3' end of the RNA molecule according to Agilent miRNA protocol version 1.0
 
Hybridization protocol Human microRNA Microarray Kit (Agilent Technologies) according to manufacture’s protocol. (http://www.chem.agilent.com/en-US/Pages/Homepage.aspx)
Scan protocol Scanned on an Agilent C scanner. Images were quantified using Agilent Feature Extraction Software ( v 10.10.1.1).
Description S-11
Data processing Raw data were extracted using the Agilent Feature Extraction Software (v 10.7.1.1) and then processed as published previously <Processing of Agilent microRNA array data, BMC RES NOTES,2010>
 
Submission date Jan 28, 2013
Last update date Dec 31, 2013
Contact name minhee park
Organization name student
Street address shinchondong
City seoul
ZIP/Postal code 120-752
Country South Korea
 
Platform ID GPL15159
Series (2)
GSE43796 microRNA expression of pancreatic tumors
GSE43797 Characterization of mRNA and microRNA expression profiles in solid-pseudopapillary neoplasm of pancreas, ductal adenocarcinoma and pancreatic neuroendocrine tumors

Data table header descriptions
ID_REF
VALUE The value was log2 transformed and quantile normalized

Data table
ID_REF VALUE
A_25_P00010019 5.53880231
A_25_P00010020 5.638607228
A_25_P00010021 5.639508564
A_25_P00010023 5.68753722
A_25_P00010041 5.655934138
A_25_P00010042 5.64175881
A_25_P00010043 5.545691154
A_25_P00010044 5.4970296
A_25_P00010047 9.579850694
A_25_P00010048 7.98285585
A_25_P00010053 13.91509631
A_25_P00010054 11.92844743
A_25_P00010062 5.539978412
A_25_P00010063 5.573722731
A_25_P00010070 13.28125567
A_25_P00010071 12.7798452
A_25_P00010072 12.34042436
A_25_P00010073 10.38464507
A_25_P00010078 7.196167388
A_25_P00010079 6.192936153

Total number of rows: 3523

Table truncated, full table size 92 Kbytes.




Supplementary file Size Download File type/resource
GSM1071397_S-11.txt.gz 3.0 Mb (ftp)(http) TXT
Processed data included within Sample table

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