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Sample GSM1071392 Query DataSets for GSM1071392
Status Public on Dec 31, 2013
Title SPN-6 [miRNA]
Sample type RNA
Source name solid-pseudopapillary neoplasm
Organism Homo sapiens
Characteristics gender: female
age: 26
tissue: Solid-pseudopapillary neoplasm of pancreas (SPN)
Extracted molecule total RNA
Extraction protocol Total RNA was obtained from each independent tissue of patient and extracted using TRIzol Reagent (Invitrogen).
Label Cy3-pCp
Label protocol 100ng total RNA was dephosphorylated at the presence of calf intestine alkaline phsphatase, then a Cy3-pCp molecule was then ligated to the 3' end of the RNA molecule according to Agilent miRNA protocol version 1.0
Hybridization protocol Human microRNA Microarray Kit (Agilent Technologies) according to manufacture’s protocol. (
Scan protocol Scanned on an Agilent C scanner. Images were quantified using Agilent Feature Extraction Software ( v
Description S-6
Data processing Raw data were extracted using the Agilent Feature Extraction Software (v and then processed as published previously <Processing of Agilent microRNA array data, BMC RES NOTES,2010>
Submission date Jan 28, 2013
Last update date Dec 31, 2013
Contact name minhee park
Organization name student
Street address shinchondong
City seoul
ZIP/Postal code 120-752
Country South Korea
Platform ID GPL15159
Series (2)
GSE43796 microRNA expression of pancreatic tumors
GSE43797 Characterization of mRNA and microRNA expression profiles in solid-pseudopapillary neoplasm of pancreas, ductal adenocarcinoma and pancreatic neuroendocrine tumors

Data table header descriptions
VALUE The value was log2 transformed and quantile normalized

Data table
A_25_P00010019 5.687563752
A_25_P00010020 5.615492771
A_25_P00010021 5.682430657
A_25_P00010023 5.694654504
A_25_P00010041 5.585169416
A_25_P00010042 5.56010078
A_25_P00010043 5.589338283
A_25_P00010044 5.558993702
A_25_P00010047 8.92352097
A_25_P00010048 7.316483762
A_25_P00010053 14.03771765
A_25_P00010054 12.08109183
A_25_P00010062 5.834207196
A_25_P00010063 5.616895139
A_25_P00010070 13.52319978
A_25_P00010071 12.88402744
A_25_P00010072 12.68367763
A_25_P00010073 10.56704874
A_25_P00010078 8.35005382
A_25_P00010079 6.855343701

Total number of rows: 3523

Table truncated, full table size 92 Kbytes.

Supplementary file Size Download File type/resource
GSM1071392_S-6.txt.gz 3.0 Mb (ftp)(http) TXT
Processed data included within Sample table

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