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Sample GSM1071391 Query DataSets for GSM1071391
Status Public on Dec 31, 2013
Title SPN-5 [miRNA]
Sample type RNA
Source name solid-pseudopapillary neoplasm
Organism Homo sapiens
Characteristics gender: male
age: 56
tissue: Solid-pseudopapillary neoplasm of pancreas (SPN)
Extracted molecule total RNA
Extraction protocol Total RNA was obtained from each independent tissue of patient and extracted using TRIzol Reagent (Invitrogen).
Label Cy3-pCp
Label protocol 100ng total RNA was dephosphorylated at the presence of calf intestine alkaline phsphatase, then a Cy3-pCp molecule was then ligated to the 3' end of the RNA molecule according to Agilent miRNA protocol version 1.0
Hybridization protocol Human microRNA Microarray Kit (Agilent Technologies) according to manufacture’s protocol. (
Scan protocol Scanned on an Agilent C scanner. Images were quantified using Agilent Feature Extraction Software ( v
Description S-5
Data processing Raw data were extracted using the Agilent Feature Extraction Software (v and then processed as published previously <Processing of Agilent microRNA array data, BMC RES NOTES,2010>
Submission date Jan 28, 2013
Last update date Dec 31, 2013
Contact name minhee park
Organization name student
Street address shinchondong
City seoul
ZIP/Postal code 120-752
Country South Korea
Platform ID GPL15159
Series (2)
GSE43796 microRNA expression of pancreatic tumors
GSE43797 Characterization of mRNA and microRNA expression profiles in solid-pseudopapillary neoplasm of pancreas, ductal adenocarcinoma and pancreatic neuroendocrine tumors

Data table header descriptions
VALUE The value was log2 transformed and quantile normalized

Data table
A_25_P00010019 5.714211112
A_25_P00010020 5.630407213
A_25_P00010021 5.649500454
A_25_P00010023 5.684807113
A_25_P00010041 5.590954052
A_25_P00010042 5.624853856
A_25_P00010043 5.533069253
A_25_P00010044 5.539738492
A_25_P00010047 10.11859656
A_25_P00010048 8.494524553
A_25_P00010053 14.37347056
A_25_P00010054 12.56952289
A_25_P00010062 5.903761012
A_25_P00010063 5.612283064
A_25_P00010070 12.8540887
A_25_P00010071 12.49734196
A_25_P00010072 12.06430309
A_25_P00010073 10.26105086
A_25_P00010078 8.497387461
A_25_P00010079 7.03958025

Total number of rows: 3523

Table truncated, full table size 92 Kbytes.

Supplementary file Size Download File type/resource
GSM1071391_S-5.txt.gz 3.0 Mb (ftp)(http) TXT
Processed data included within Sample table

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