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Sample GSM1071390 Query DataSets for GSM1071390
Status Public on Dec 31, 2013
Title SPN-4 [miRNA]
Sample type RNA
Source name solid-pseudopapillary neoplasm
Organism Homo sapiens
Characteristics gender: male
age: 41
tissue: Solid-pseudopapillary neoplasm of pancreas (SPN)
Extracted molecule total RNA
Extraction protocol Total RNA was obtained from each independent tissue of patient and extracted using TRIzol Reagent (Invitrogen).
Label Cy3-pCp
Label protocol 100ng total RNA was dephosphorylated at the presence of calf intestine alkaline phsphatase, then a Cy3-pCp molecule was then ligated to the 3' end of the RNA molecule according to Agilent miRNA protocol version 1.0
Hybridization protocol Human microRNA Microarray Kit (Agilent Technologies) according to manufacture’s protocol. (
Scan protocol Scanned on an Agilent C scanner. Images were quantified using Agilent Feature Extraction Software ( v
Description S-4
Data processing Raw data were extracted using the Agilent Feature Extraction Software (v and then processed as published previously <Processing of Agilent microRNA array data, BMC RES NOTES,2010>
Submission date Jan 28, 2013
Last update date Dec 31, 2013
Contact name minhee park
Organization name student
Street address shinchondong
City seoul
ZIP/Postal code 120-752
Country South Korea
Platform ID GPL15159
Series (2)
GSE43796 microRNA expression of pancreatic tumors
GSE43797 Characterization of mRNA and microRNA expression profiles in solid-pseudopapillary neoplasm of pancreas, ductal adenocarcinoma and pancreatic neuroendocrine tumors

Data table header descriptions
VALUE The value was log2 transformed and quantile normalized

Data table
A_25_P00010019 5.713762507
A_25_P00010020 5.679346466
A_25_P00010021 5.650540803
A_25_P00010023 5.705197979
A_25_P00010041 5.583870981
A_25_P00010042 5.61816505
A_25_P00010043 5.561145513
A_25_P00010044 5.520729399
A_25_P00010047 10.73207447
A_25_P00010048 8.82997966
A_25_P00010053 13.41045851
A_25_P00010054 11.20209341
A_25_P00010062 5.665261797
A_25_P00010063 5.574924548
A_25_P00010070 13.02267162
A_25_P00010071 12.51082636
A_25_P00010072 12.02036261
A_25_P00010073 10.19133808
A_25_P00010078 8.477630271
A_25_P00010079 7.018264917

Total number of rows: 3523

Table truncated, full table size 92 Kbytes.

Supplementary file Size Download File type/resource
GSM1071390_S-4.txt.gz 3.0 Mb (ftp)(http) TXT
Processed data included within Sample table

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