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Sample GSM1071389 Query DataSets for GSM1071389
Status Public on Dec 31, 2013
Title SPN-3 [miRNA]
Sample type RNA
Source name solid-pseudopapillary neoplasm
Organism Homo sapiens
Characteristics gender: male
age: 70
tissue: Solid-pseudopapillary neoplasm of pancreas (SPN)
Extracted molecule total RNA
Extraction protocol Total RNA was obtained from each independent tissue of patient and extracted using TRIzol Reagent (Invitrogen).
Label Cy3-pCp
Label protocol 100ng total RNA was dephosphorylated at the presence of calf intestine alkaline phsphatase, then a Cy3-pCp molecule was then ligated to the 3' end of the RNA molecule according to Agilent miRNA protocol version 1.0
Hybridization protocol Human microRNA Microarray Kit (Agilent Technologies) according to manufacture’s protocol. (
Scan protocol Scanned on an Agilent C scanner. Images were quantified using Agilent Feature Extraction Software ( v
Description S-3
Data processing Raw data were extracted using the Agilent Feature Extraction Software (v and then processed as published previously <Processing of Agilent microRNA array data, BMC RES NOTES,2010>
Submission date Jan 28, 2013
Last update date Dec 31, 2013
Contact name minhee park
Organization name student
Street address shinchondong
City seoul
ZIP/Postal code 120-752
Country South Korea
Platform ID GPL15159
Series (2)
GSE43796 microRNA expression of pancreatic tumors
GSE43797 Characterization of mRNA and microRNA expression profiles in solid-pseudopapillary neoplasm of pancreas, ductal adenocarcinoma and pancreatic neuroendocrine tumors

Data table header descriptions
VALUE The value was log2 transformed and quantile normalized

Data table
A_25_P00010019 5.706026965
A_25_P00010020 5.724909179
A_25_P00010021 5.696590754
A_25_P00010023 5.609884706
A_25_P00010041 5.655817029
A_25_P00010042 5.621962124
A_25_P00010043 5.603823305
A_25_P00010044 5.426116321
A_25_P00010047 10.63907545
A_25_P00010048 9.180475369
A_25_P00010053 14.17223409
A_25_P00010054 12.22111114
A_25_P00010062 6.021788476
A_25_P00010063 5.649868782
A_25_P00010070 13.77069722
A_25_P00010071 13.47097151
A_25_P00010072 13.02179063
A_25_P00010073 11.64361942
A_25_P00010078 8.71808264
A_25_P00010079 7.267799907

Total number of rows: 3523

Table truncated, full table size 92 Kbytes.

Supplementary file Size Download File type/resource
GSM1071389_S-3.txt.gz 3.0 Mb (ftp)(http) TXT
Processed data included within Sample table

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