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Sample GSM107069 Query DataSets for GSM107069
Status Public on Aug 11, 2006
Title 57_5dPA_MK02X022
Sample type RNA
Source name amputation blastema-proximal (1mm) tissue from Xenopus laevis hindlimbs
Organism Xenopus laevis
Characteristics Stage 57 Xenopus leavis hindlimbs, 5 day post-amputation
Extracted molecule total RNA
Label biotin
Description Gene expression data from Hindlimbs at either st57 were amputated unilaterally or bilaterally at the mid-zeugopodia level. Five days (5dPA) after amputation tissues were collected 1mm proximal to the original level of amputation. Total RNA was isolated using RNaqueous micro kit (Ambion, inc.).
Data processing The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method.
Submission date Apr 28, 2006
Last update date Aug 10, 2006
Contact name Matthew Grow
Organization name Indiana University
Department Biochemistry and Molecular Biology
Lab Center for Medical Genomics
Street address 1345 W 16th St
City Indianapolis
State/province IN
ZIP/Postal code 46202
Country USA
Platform ID GPL1318
Series (1)
GSE4738 Global analysis of gene expression in Xenopus hindlimbs during stage-dependent complete and incomplete regeneration

Data table header descriptions
VALUE MAS5-calculated Signal intensity
ABS_CALL the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
DETECTION P-VALUE 'detection p-value', p-value that indicates the significance level of the detection call

Data table
AFFX-BioB-5_at 1558.3 P 0.000754
AFFX-BioB-M_at 2823.2 P 0.000258
AFFX-BioB-3_at 1612.2 P 0.000044
AFFX-BioC-5_at 6329.9 P 0.00007
AFFX-BioC-3_at 5569.1 P 0.000044
AFFX-BioDn-5_at 12155.4 P 0.000044
AFFX-BioDn-3_at 17571.8 P 0.00006
AFFX-CreX-5_at 54815.8 P 0.000044
AFFX-CreX-3_at 75749.9 P 0.000044
AFFX-DapX-5_at 183.8 P 0.030976
AFFX-DapX-M_at 1447 P 0.001102
AFFX-DapX-3_at 8959.5 P 0.00007
AFFX-LysX-5_at 185 P 0.018281
AFFX-LysX-M_at 1014.5 P 0.004017
AFFX-LysX-3_at 4099.1 P 0.000052
AFFX-PheX-5_at 157.1 M 0.050229
AFFX-PheX-M_at 188.9 A 0.300606
AFFX-PheX-3_at 2585.6 P 0.00006
AFFX-ThrX-5_at 14.9 A 0.990663
AFFX-ThrX-M_at 224.4 A 0.083592

Total number of rows: 15611

Table truncated, full table size 509 Kbytes.

Supplementary data files not provided

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