NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM1069141 Query DataSets for GSM1069141
Status Public on Jan 24, 2013
Title genomic DNA from superior temporal gyrus_6042316054_R06C02_Cohort 1D
Sample type genomic
 
Source name 6042316054_R06C02_Cohort 1D
Organism Homo sapiens
Characteristics subjectid: 50
barcode: 6042316054_R06C02
lunnonetal: TRUE
tissue_code: F
braak.stage: 0
Sex: MALE
ad.disease.status: C
age.brain: 59
age.blood: NA
source tissue: superior temporal gyrus
Extracted molecule genomic DNA
Extraction protocol Genomic DNA was extracted and purified from post-mortem brain or blood samples using phenol-chloroform protocol according to standard instructions
Label Cy5 and Cy3
Label protocol Standard Illumina Protocol
 
Hybridization protocol Bisulfite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using HiScan using standard recommended Illumina scanner setting
Data processing GenomeStudio software v2011.1 used to generate the raw intensity file (unmethylated and methylated signal intensities).
Data used in the development of the R wateRmelon package for analysis of Illumina Infinium450 Human Methylation data.
The GenomeStudio v2011.1-computed Average Betas (normalized) is betaqn_geo_all cohorts.csv.
Thirteen other wateRmelon-generated normalized beta matrices include:
danen_geo_all cohorts.csv
danes_geo_all cohorts.csv
danet_geo_all cohorts.csv
daten1_geo_all cohorts.csv
daten2_geo_all cohorts.csv
fuks_geo_all cohorts.csv
nanes_geo_all cohorts.csv
nanet_geo_all cohorts.csv
nasen_geo_all cohorts.csv
naten_geo_all cohorts.csv
swan_geo_all cohorts.csv
tost_geo_all cohorts.csv
dasen_geo_all cohorts.csv
 
Submission date Jan 24, 2013
Last update date Jul 23, 2014
Contact name Chloe Wong
E-mail(s) chloe.wong@kcl.ac.uk
Organization name King's College London
Street address MRC SGDP Centre, Institute of Psychiatry,
City London
State/province Select a State or Province
ZIP/Postal code SE5 8AF
Country United Kingdom
 
Platform ID GPL13534
Series (1)
GSE43414 A data-driven approach to preprocessing Illumina 450K methylation array data
Relations
Reanalyzed by GSM1443483

Supplementary data files not provided
Processed data are available on Series record

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap