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Sample GSM1068592 Query DataSets for GSM1068592
Status Public on Jan 20, 2015
Title B08-4721
Sample type RNA
Source name Grupo1
Organism Homo sapiens
Characteristics tissue: skeletal muscle
gender: male
age: 5 years
sample type: mitochondrial myopathy
Extracted molecule total RNA
Extraction protocol Total RNA was extracted from skeletal muscle biopsies with Qiagen (Qiagen, Hilden, Germany) RNeasy Fibrous Tissue mini kit following the manufacturer’s instructions
Label cy3
Label protocol RNA (500 ng) was labeled using Agilent's Low Input RNA Labeling Kit, which involves reverse transcribing the mRNA in the presence of T7-oligo-dT primer to produce cDNA and then in vitro transcribing with T7 RNA polymerase in the presence of Cy3-CTP
Hybridization protocol Labelled cRNAs were hybridised to the Agilent Human SurePrintGE, 8x60K according to manufacturer´s instructions
Scan protocol The arrays were washed, dried by centrifugation and scanned on an Agilent G2565BA microarray scanner at 100% PMT and 5 μm resolution
Description patient reference in corresponding publication: *
Data processing Bioconductor limma package, using background correction (normexp) and quantiles normalization between arrays for final values
Submission date Jan 23, 2013
Last update date Jan 20, 2015
Contact name Susana Kalko
Organization name IDIBAPS
Department Bioinformatics Platform
Street address c/Rosello 153
City Barcelona
State/province BARCELONA
ZIP/Postal code 08036
Country Spain
Platform ID GPL13607
Series (1)
GSE43698 Muscle from patients with mitochondrial myopathies and congenital muscular dystrophies versus normal human muscle

Data table header descriptions
VALUE quantile normalized

Data table
4 8.80305055
5 6.553567847
6 6.379123922
7 11.37282013
8 8.234697024
9 6.275375195
10 7.121795818
11 6.285338096
12 10.56128953
13 10.10468861
14 7.425722901
15 7.104095489
16 6.163745949
17 7.18433965
18 6.188653923
19 6.268255843
20 10.02464229
21 8.365973558
22 6.114158701
23 6.700123535

Total number of rows: 62973

Table truncated, full table size 1089 Kbytes.

Supplementary file Size Download File type/resource
GSM1068592_27_MA_2300252800413961_Cy3_B08-4721_2_3.txt.gz 12.2 Mb (ftp)(http) TXT
Processed data included within Sample table

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