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Sample GSM1068571 Query DataSets for GSM1068571
Status Public on Jan 20, 2015
Title 99B-4075
Sample type RNA
Source name Pat1
Organism Homo sapiens
Characteristics tissue: skeletal muscle
gender: female
age: 1 year
sample type: Congenital Muscular Dystrophy
Extracted molecule total RNA
Extraction protocol Total RNA was extracted from skeletal muscle biopsies with Qiagen (Qiagen, Hilden, Germany) RNeasy Fibrous Tissue mini kit following the manufacturer’s instructions
Label cy3
Label protocol RNA (500 ng) was labeled using Agilent's Low Input RNA Labeling Kit, which involves reverse transcribing the mRNA in the presence of T7-oligo-dT primer to produce cDNA and then in vitro transcribing with T7 RNA polymerase in the presence of Cy3-CTP
Hybridization protocol Labelled cRNAs were hybridised to the Agilent Human SurePrintGE, 8x60K according to manufacturer´s instructions
Scan protocol The arrays were washed, dried by centrifugation and scanned on an Agilent G2565BA microarray scanner at 100% PMT and 5 μm resolution
Description patient reference in corresponding publication: CMD1
Data processing Bioconductor limma package, using background correction (normexp) and quantiles normalization between arrays for final values
Submission date Jan 23, 2013
Last update date Jan 20, 2015
Contact name Susana Kalko
Organization name IDIBAPS
Department Bioinformatics Platform
Street address c/Rosello 153
City Barcelona
State/province BARCELONA
ZIP/Postal code 08036
Country Spain
Platform ID GPL13607
Series (1)
GSE43698 Muscle from patients with mitochondrial myopathies and congenital muscular dystrophies versus normal human muscle

Data table header descriptions
VALUE quantile normalized

Data table
4 7.945257234
5 6.527485027
6 6.491588267
7 10.17282879
8 7.862972923
9 5.945265664
10 6.540376539
11 5.901984951
12 10.01652513
13 9.778445299
14 6.936132659
15 6.684821229
16 5.924772693
17 6.756117341
18 5.925211446
19 6.037841806
20 9.565446817
21 9.077428743
22 5.985994322
23 6.011820783

Total number of rows: 62973

Table truncated, full table size 1089 Kbytes.

Supplementary file Size Download File type/resource
GSM1068571_05_MA_1200252800414335_Cy3_99B-4075_1_2.txt.gz 12.2 Mb (ftp)(http) TXT
Processed data included within Sample table

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