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Sample GSM1060188 Query DataSets for GSM1060188
Status Public on May 06, 2013
Title PHEO_AG_HS_111
Sample type genomic
Source name PHEO_AG_HS_111
Organism Homo sapiens
Characteristics Sex: Female
mut.gene: VHL
mut.type: Germline
malignancy: Benign
pathological diagnosis: paraganglioma
Extracted molecule genomic DNA
Extraction protocol DNA was extracted from frozen tissue samples using a QIAamp DNA mini kit or an AllPrep kit (Qiagen).
Label Cy5 and Cy3
Label protocol standard Illumina protocol
Hybridization protocol standard Illumina protocol
Scan protocol standard Illumina protocol
Description paraganglioma
Data processing standard Illumina protocol. Illumina Beadstudio software.
Submission date Jan 04, 2013
Last update date May 06, 2013
Contact name Eric Letouzé
Organization name Ligue Contre Le Cancer
Lab Centre de Recherche des Cordeliers
Street address 15 rue de l'école de médecine
City Paris
ZIP/Postal code 75006
Country France
Platform ID GPL13534
Series (2)
GSE43293 Genome-scale methylome profiling of pheochromocytomas and paragangliomas with Illumina HumanMethylation450 arrays
GSE43298 Genome-scale methylome profiling of human pheochromocytomas and paragangliomas (Illumina methylation beadchips) and mouse chromaffin cells (RRBS)
Reanalysis of GSM957907

Data table header descriptions
ID_REF This column corresponds to the ID column of the reference platform
VALUE Beta values exported from Illumina Beadstudio software

Data table
cg00000029 0.7131078 0
cg00000108 0.8998997 0
cg00000109 0.7244786 0
cg00000165 0.3932203 0
cg00000236 0.7765805 0
cg00000289 0.5095116 0
cg00000292 0.7809998 0
cg00000321 0.6859455 0
cg00000363 0.1134442 0
cg00000622 0.02031511 0
cg00000658 0.8234245 0
cg00000714 0.2111072 0
cg00000721 0.8888167 0
cg00000734 0.08673925 0
cg00000769 0.05385906 0
cg00000807 0.7703456 0
cg00000884 0.7957779 0
cg00000905 0.1242236 0
cg00000924 0.3813083 0
cg00000948 0.7530059 0

Total number of rows: 485577

Table truncated, full table size 10988 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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