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Sample GSM1060184 Query DataSets for GSM1060184
Status Public on May 06, 2013
Title PHEO_AG_HS_060
Sample type genomic
 
Source name PHEO_AG_HS_060
Organism Homo sapiens
Characteristics Sex: Male
mut.gene: RET
mut.type: Somatic
malignancy: Benign
pathological diagnosis: paraganglioma
Extracted molecule genomic DNA
Extraction protocol DNA was extracted from frozen tissue samples using a QIAamp DNA mini kit or an AllPrep kit (Qiagen).
Label Cy5 and Cy3
Label protocol standard Illumina protocol
 
Hybridization protocol standard Illumina protocol
Scan protocol standard Illumina protocol
Description paraganglioma
Data processing standard Illumina protocol. Illumina Beadstudio software.
 
Submission date Jan 04, 2013
Last update date May 06, 2013
Contact name Eric Letouzé
E-mail(s) Eric.letouze@inserm.fr
Organization name Ligue Contre Le Cancer
Lab Centre de Recherche des Cordeliers
Street address 15 rue de l'école de médecine
City Paris
ZIP/Postal code 75006
Country France
 
Platform ID GPL13534
Series (2)
GSE43293 Genome-scale methylome profiling of pheochromocytomas and paragangliomas with Illumina HumanMethylation450 arrays
GSE43298 Genome-scale methylome profiling of human pheochromocytomas and paragangliomas (Illumina methylation beadchips) and mouse chromaffin cells (RRBS)
Relations
Reanalysis of GSM957873

Data table header descriptions
ID_REF This column corresponds to the ID column of the reference platform
VALUE Beta values exported from Illumina Beadstudio software
DETECTION_P-VALUE

Data table
ID_REF VALUE DETECTION_P-VALUE
cg00000029 0.6588595 0
cg00000108 0.9182783 0
cg00000109 0.7687604 0
cg00000165 0.2245614 0
cg00000236 0.6995153 0
cg00000289 0.3784079 0
cg00000292 0.4711891 0
cg00000321 0.691358 0
cg00000363 0.1571403 0
cg00000622 0.02711684 0
cg00000658 0.6233616 0
cg00000714 0.1184078 0
cg00000721 0.8829298 0
cg00000734 0.08470611 0
cg00000769 0.05953714 0
cg00000807 0.4312673 0
cg00000884 0.8181168 0
cg00000905 0.13832 0
cg00000924 0.5488791 0
cg00000948 0.85579 0

Total number of rows: 485577

Table truncated, full table size 10995 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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