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Sample GSM1056318 Query DataSets for GSM1056318
Status Public on Feb 07, 2013
Title FVB_EF1a_PyMT10c_426_2nd_48_Perou
Sample type RNA
 
Source name FVB_EF1a_PyMT10c_426_2nd_48_Perou
Organism Mus musculus
Characteristics tissue type: mouse mammary tumor
Biomaterial provider Brian Welm and Brittni Smith - Cancer Institute University of Utah
Treatment protocol described in Hu et al., 2005, BioTechniques, 38:121-124
Growth protocol described in Hu et al., 2005, BioTechniques, 38:121-124
Extracted molecule total RNA
Extraction protocol Qiagen Rneasy Kit
Label Cy5
Label protocol described in Hu et al., 2005, BioTechniques, 38:121-124
 
Hybridization protocol described in Hu et al., 2005, BioTechniques, 38:121-124
Scan protocol Agilent Technologies Scanner G2505C US82800149 Using Feature Extraction Software
Data processing Array data was filtered to remove control features and any non-uniform features or population outlier features. Remaining features were averaged to yield a single value for each unique probe. Finally data were log2 transformed, quantile normalized, and adjusted for batch effects using ComBat.
 
Submission date Dec 20, 2012
Last update date Feb 07, 2013
Contact name Bryan Welm
E-mail(s) Bryan.Welm@hci.utah.edu
Phone 801-587-4633
Organization name University of Utah, Huntsman Cancer Institute
Department Oncological Science
Lab Bryan Welm Lab
Street address 2000 Circle of Hope Drive
City Salt Lake City
State/province UT
ZIP/Postal code 84112
Country USA
 
Platform ID GPL7202
Series (1)
GSE40001 Targeting PyMT oncogene to diverse mammary cell populations enhances tumor heterogeneity and generates rare breast cancer subtypes

Data table header descriptions
ID_REF
VALUE Log 2 transformed normalized intensity data

Data table
ID_REF VALUE
A_51_P100021 4.460979679
A_51_P100034 10.49444598
A_51_P100052 4.654733964
A_51_P100084 6.969980753
A_51_P100099 8.074406437
A_51_P100155 10.61507023
A_51_P100174 8.539472013
A_51_P100218 5.028264343
A_51_P100227 9.441948659
A_51_P100238 3.383231938
A_51_P100246 8.586497579
A_51_P100289 9.603724042
A_51_P100327 7.853239943
A_51_P100347 1.749255861
A_51_P100470 5.272594281
A_51_P100537 5.337213873
A_51_P100565 7.295432398
A_51_P100624 3.468427313
A_51_P100625 6.371811375
A_51_P100768 3.877175553

Total number of rows: 13988

Table truncated, full table size 340 Kbytes.




Supplementary file Size Download File type/resource
GSM1056318_Tumor_426_UNC.txt.gz 8.2 Mb (ftp)(http) TXT
Processed data included within Sample table

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