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Status |
Public on Feb 07, 2013 |
Title |
FVB_EF1a_PyMT10c_449_2nd _43_Perou |
Sample type |
RNA |
|
|
Source name |
FVB_EF1a_PyMT10c_449_2nd _43_Perou
|
Organism |
Mus musculus |
Characteristics |
tissue type: mouse mammary tumor
|
Biomaterial provider |
Brian Welm and Brittni Smith - Cancer Institute University of Utah
|
Treatment protocol |
described in Hu et al., 2005, BioTechniques, 38:121-124
|
Growth protocol |
described in Hu et al., 2005, BioTechniques, 38:121-124
|
Extracted molecule |
total RNA |
Extraction protocol |
Qiagen Rneasy Kit
|
Label |
Cy5
|
Label protocol |
described in Hu et al., 2005, BioTechniques, 38:121-124
|
|
|
Hybridization protocol |
described in Hu et al., 2005, BioTechniques, 38:121-124
|
Scan protocol |
Agilent Technologies Scanner G2505C US82800149 Using Feature Extraction Software
|
Data processing |
Array data was filtered to remove control features and any non-uniform features or population outlier features. Remaining features were averaged to yield a single value for each unique probe. Finally data were log2 transformed, quantile normalized, and adjusted for batch effects using ComBat.
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|
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Submission date |
Dec 20, 2012 |
Last update date |
Feb 07, 2013 |
Contact name |
Bryan Welm |
E-mail(s) |
Bryan.Welm@hci.utah.edu
|
Phone |
801-587-4633
|
Organization name |
University of Utah, Huntsman Cancer Institute
|
Department |
Oncological Science
|
Lab |
Bryan Welm Lab
|
Street address |
2000 Circle of Hope Drive
|
City |
Salt Lake City |
State/province |
UT |
ZIP/Postal code |
84112 |
Country |
USA |
|
|
Platform ID |
GPL7202 |
Series (1) |
GSE40001 |
Targeting PyMT oncogene to diverse mammary cell populations enhances tumor heterogeneity and generates rare breast cancer subtypes |
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