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Sample GSM1056317 Query DataSets for GSM1056317
Status Public on Feb 07, 2013
Title FVB_EF1a_PyMT10c_449_2nd _43_Perou
Sample type RNA
Source name FVB_EF1a_PyMT10c_449_2nd _43_Perou
Organism Mus musculus
Characteristics tissue type: mouse mammary tumor
Biomaterial provider Brian Welm and Brittni Smith - Cancer Institute University of Utah
Treatment protocol described in Hu et al., 2005, BioTechniques, 38:121-124
Growth protocol described in Hu et al., 2005, BioTechniques, 38:121-124
Extracted molecule total RNA
Extraction protocol Qiagen Rneasy Kit
Label Cy5
Label protocol described in Hu et al., 2005, BioTechniques, 38:121-124
Hybridization protocol described in Hu et al., 2005, BioTechniques, 38:121-124
Scan protocol Agilent Technologies Scanner G2505C US82800149 Using Feature Extraction Software
Data processing Array data was filtered to remove control features and any non-uniform features or population outlier features. Remaining features were averaged to yield a single value for each unique probe. Finally data were log2 transformed, quantile normalized, and adjusted for batch effects using ComBat.
Submission date Dec 20, 2012
Last update date Feb 07, 2013
Contact name Bryan Welm
Phone 801-587-4633
Organization name University of Utah, Huntsman Cancer Institute
Department Oncological Science
Lab Bryan Welm Lab
Street address 2000 Circle of Hope Drive
City Salt Lake City
State/province UT
ZIP/Postal code 84112
Country USA
Platform ID GPL7202
Series (1)
GSE40001 Targeting PyMT oncogene to diverse mammary cell populations enhances tumor heterogeneity and generates rare breast cancer subtypes

Data table header descriptions
VALUE Log 2 transformed normalized intensity data

Data table
A_51_P100021 3.10290039
A_51_P100034 10.17285624
A_51_P100052 5.079169065
A_51_P100084 6.254073162
A_51_P100099 7.56957949
A_51_P100155 11.00971674
A_51_P100174 8.217217942
A_51_P100218 4.173849151
A_51_P100227 8.004274577
A_51_P100238 3.386637637
A_51_P100246 8.899178385
A_51_P100289 10.41744356
A_51_P100327 7.321561921
A_51_P100347 4.569556528
A_51_P100470 6.833475336
A_51_P100537 5.772772718
A_51_P100565 7.386212468
A_51_P100624 4.66810363
A_51_P100625 4.827433523
A_51_P100768 4.171439969

Total number of rows: 13988

Table truncated, full table size 339 Kbytes.

Supplementary file Size Download File type/resource
GSM1056317_Tumor_449_UNC.txt.gz 8.2 Mb (ftp)(http) TXT
Processed data included within Sample table

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