GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
Sample GSM1056316 Query DataSets for GSM1056316
Status Public on Feb 07, 2013
Title FVB_EF1a_PyMT10c_39_Perou
Sample type RNA
Source name FVB_EF1a_PyMT10c_39_Perou
Organism Mus musculus
Characteristics tissue type: mouse mammary tumor
Biomaterial provider Brian Welm and Brittni Smith - Cancer Institute University of Utah
Treatment protocol described in Hu et al., 2005, BioTechniques, 38:121-124
Growth protocol described in Hu et al., 2005, BioTechniques, 38:121-124
Extracted molecule total RNA
Extraction protocol Qiagen Rneasy Kit
Label Cy5
Label protocol described in Hu et al., 2005, BioTechniques, 38:121-124
Hybridization protocol described in Hu et al., 2005, BioTechniques, 38:121-124
Scan protocol Agilent Technologies Scanner G2505C US82800149 Using Feature Extraction Software
Data processing Array data was filtered to remove control features and any non-uniform features or population outlier features. Remaining features were averaged to yield a single value for each unique probe. Finally data were log2 transformed, quantile normalized, and adjusted for batch effects using ComBat.
Submission date Dec 20, 2012
Last update date Feb 07, 2013
Contact name Bryan Welm
Phone 801-587-4633
Organization name University of Utah, Huntsman Cancer Institute
Department Oncological Science
Lab Bryan Welm Lab
Street address 2000 Circle of Hope Drive
City Salt Lake City
State/province UT
ZIP/Postal code 84112
Country USA
Platform ID GPL7202
Series (1)
GSE40001 Targeting PyMT oncogene to diverse mammary cell populations enhances tumor heterogeneity and generates rare breast cancer subtypes

Data table header descriptions
VALUE Log 2 transformed normalized intensity data

Data table
A_51_P100021 4.341275489
A_51_P100034 10.54911809
A_51_P100052 4.286268591
A_51_P100084 9.75134456
A_51_P100099 7.787356945
A_51_P100155 10.89033684
A_51_P100174 8.999493609
A_51_P100218 2.843421002
A_51_P100227 9.640116097
A_51_P100238 3.362481953
A_51_P100246 9.152891377
A_51_P100289 9.600022251
A_51_P100327 7.732163777
A_51_P100347 4.167956786
A_51_P100470 7.299259408
A_51_P100537 5.026900153
A_51_P100565 5.85683751
A_51_P100624 1.734745387
A_51_P100625 5.539083975
A_51_P100768 3.193882502

Total number of rows: 13988

Table truncated, full table size 340 Kbytes.

Supplementary file Size Download File type/resource
GSM1056316_Tumor_39_UNC.txt.gz 8.2 Mb (ftp)(http) TXT
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap