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Sample GSM1056315 Query DataSets for GSM1056315
Status Public on Feb 07, 2013
Title FVB_EF1a_PyMT10c_37_Perou
Sample type RNA
Source name FVB_EF1a_PyMT10c_37_Perou
Organism Mus musculus
Characteristics tissue type: mouse mammary tumor
Biomaterial provider Brian Welm and Brittni Smith - Cancer Institute University of Utah
Treatment protocol described in Hu et al., 2005, BioTechniques, 38:121-124
Growth protocol described in Hu et al., 2005, BioTechniques, 38:121-124
Extracted molecule total RNA
Extraction protocol Qiagen Rneasy Kit
Label Cy5
Label protocol described in Hu et al., 2005, BioTechniques, 38:121-124
Hybridization protocol described in Hu et al., 2005, BioTechniques, 38:121-124
Scan protocol Agilent Technologies Scanner G2505C US82800149 Using Feature Extraction Software
Data processing Array data was filtered to remove control features and any non-uniform features or population outlier features. Remaining features were averaged to yield a single value for each unique probe. Finally data were log2 transformed, quantile normalized, and adjusted for batch effects using ComBat.
Submission date Dec 20, 2012
Last update date Feb 07, 2013
Contact name Bryan Welm
Phone 801-587-4633
Organization name University of Utah, Huntsman Cancer Institute
Department Oncological Science
Lab Bryan Welm Lab
Street address 2000 Circle of Hope Drive
City Salt Lake City
State/province UT
ZIP/Postal code 84112
Country USA
Platform ID GPL7202
Series (1)
GSE40001 Targeting PyMT oncogene to diverse mammary cell populations enhances tumor heterogeneity and generates rare breast cancer subtypes

Data table header descriptions
VALUE Log 2 transformed normalized intensity data

Data table
A_51_P100021 4.576873824
A_51_P100034 10.1653338
A_51_P100052 4.172278342
A_51_P100084 5.090170114
A_51_P100099 7.23111159
A_51_P100155 10.64607322
A_51_P100174 8.187873352
A_51_P100218 3.630965791
A_51_P100227 9.931417349
A_51_P100238 4.170889308
A_51_P100246 9.444293972
A_51_P100289 9.651253549
A_51_P100327 7.356753183
A_51_P100347 3.749407585
A_51_P100470 7.052723464
A_51_P100537 4.956975265
A_51_P100565 8.129798826
A_51_P100624 5.294885447
A_51_P100625 6.720650534
A_51_P100768 4.841512809

Total number of rows: 13988

Table truncated, full table size 340 Kbytes.

Supplementary file Size Download File type/resource
GSM1056315_Tumor_37_UNC.txt.gz 8.2 Mb (ftp)(http) TXT
Processed data included within Sample table

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