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Sample GSM1056314 Query DataSets for GSM1056314
Status Public on Feb 07, 2013
Title FVB_EF1a_PyMT10c_21_Perou
Sample type RNA
Source name FVB_EF1a_PyMT10c_21_Perou
Organism Mus musculus
Characteristics tissue type: mouse mammary tumor
Biomaterial provider Brian Welm and Brittni Smith - Cancer Institute University of Utah
Treatment protocol described in Hu et al., 2005, BioTechniques, 38:121-124
Growth protocol described in Hu et al., 2005, BioTechniques, 38:121-124
Extracted molecule total RNA
Extraction protocol Qiagen Rneasy Kit
Label Cy5
Label protocol described in Hu et al., 2005, BioTechniques, 38:121-124
Hybridization protocol described in Hu et al., 2005, BioTechniques, 38:121-124
Scan protocol Agilent Technologies Scanner G2505C US82800149 Using Feature Extraction Software
Data processing Array data was filtered to remove control features and any non-uniform features or population outlier features. Remaining features were averaged to yield a single value for each unique probe. Finally data were log2 transformed, quantile normalized, and adjusted for batch effects using ComBat.
Submission date Dec 20, 2012
Last update date Feb 07, 2013
Contact name Bryan Welm
Phone 801-587-4633
Organization name University of Utah, Huntsman Cancer Institute
Department Oncological Science
Lab Bryan Welm Lab
Street address 2000 Circle of Hope Drive
City Salt Lake City
State/province UT
ZIP/Postal code 84112
Country USA
Platform ID GPL7202
Series (1)
GSE40001 Targeting PyMT oncogene to diverse mammary cell populations enhances tumor heterogeneity and generates rare breast cancer subtypes

Data table header descriptions
VALUE Log 2 transformed normalized intensity data

Data table
A_51_P100021 4.153755071
A_51_P100034 9.829003922
A_51_P100052 4.218305766
A_51_P100084 6.186453822
A_51_P100099 7.63707408
A_51_P100155 10.54205706
A_51_P100174 8.118818297
A_51_P100218 4.462922349
A_51_P100227 9.640705808
A_51_P100238 3.367881504
A_51_P100246 9.322737932
A_51_P100289 10.12843004
A_51_P100327 4.030460277
A_51_P100347 4.041984984
A_51_P100470 7.5683765
A_51_P100537 5.039518161
A_51_P100565 6.905987073
A_51_P100624 8.708453015
A_51_P100625 5.52902524
A_51_P100768 4.675417333

Total number of rows: 13988

Table truncated, full table size 339 Kbytes.

Supplementary file Size Download File type/resource
GSM1056314_Tumor_21_UNC.txt.gz 8.2 Mb (ftp)(http) TXT
Processed data included within Sample table

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