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Sample GSM1056312 Query DataSets for GSM1056312
Status Public on Feb 07, 2013
Title FVB_EF1a_PyMT10c_16_Perou
Sample type RNA
 
Source name FVB_EF1a_PyMT10c_16_Perou
Organism Mus musculus
Characteristics tissue type: mouse mammary tumor
Biomaterial provider Brian Welm and Brittni Smith - Cancer Institute University of Utah
Treatment protocol described in Hu et al., 2005, BioTechniques, 38:121-124
Growth protocol described in Hu et al., 2005, BioTechniques, 38:121-124
Extracted molecule total RNA
Extraction protocol Qiagen Rneasy Kit
Label Cy5
Label protocol described in Hu et al., 2005, BioTechniques, 38:121-124
 
Hybridization protocol described in Hu et al., 2005, BioTechniques, 38:121-124
Scan protocol Agilent Technologies Scanner G2505C US82800149 Using Feature Extraction Software
Data processing Array data was filtered to remove control features and any non-uniform features or population outlier features. Remaining features were averaged to yield a single value for each unique probe. Finally data were log2 transformed, quantile normalized, and adjusted for batch effects using ComBat.
 
Submission date Dec 20, 2012
Last update date Feb 07, 2013
Contact name Bryan Welm
E-mail(s) Bryan.Welm@hci.utah.edu
Phone 801-587-4633
Organization name University of Utah, Huntsman Cancer Institute
Department Oncological Science
Lab Bryan Welm Lab
Street address 2000 Circle of Hope Drive
City Salt Lake City
State/province UT
ZIP/Postal code 84112
Country USA
 
Platform ID GPL7202
Series (1)
GSE40001 Targeting PyMT oncogene to diverse mammary cell populations enhances tumor heterogeneity and generates rare breast cancer subtypes

Data table header descriptions
ID_REF
VALUE Log 2 transformed normalized intensity data

Data table
ID_REF VALUE
A_51_P100021 4.541924399
A_51_P100034 10.71944345
A_51_P100052 2.131628174
A_51_P100084 8.086277294
A_51_P100099 7.889313153
A_51_P100155 11.07150415
A_51_P100174 7.796195465
A_51_P100218 4.364615065
A_51_P100227 10.46620573
A_51_P100238 3.322265787
A_51_P100246 7.825356318
A_51_P100289 9.415328382
A_51_P100327 5.621507352
A_51_P100347 2.860268825
A_51_P100470 6.15256294
A_51_P100537 3.824496553
A_51_P100565 7.59337213
A_51_P100624 4.923190556
A_51_P100625 6.425965763
A_51_P100768 4.871251208

Total number of rows: 13988

Table truncated, full table size 340 Kbytes.




Supplementary file Size Download File type/resource
GSM1056312_Tumor_16_UNC.txt.gz 8.2 Mb (ftp)(http) TXT
Processed data included within Sample table

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