|
| Status |
Public on Feb 07, 2013 |
| Title |
FVB_EF1a_PyMT10c_12_Perou |
| Sample type |
RNA |
| |
|
| Source name |
FVB_EF1a_PyMT10c_12_Perou
|
| Organism |
Mus musculus |
| Characteristics |
tissue type: mouse mammary tumor
|
| Biomaterial provider |
Brian Welm and Brittni Smith - Cancer Institute University of Utah
|
| Treatment protocol |
described in Hu et al., 2005, BioTechniques, 38:121-124
|
| Growth protocol |
described in Hu et al., 2005, BioTechniques, 38:121-124
|
| Extracted molecule |
total RNA |
| Extraction protocol |
Qiagen Rneasy Kit
|
| Label |
Cy5
|
| Label protocol |
described in Hu et al., 2005, BioTechniques, 38:121-124
|
| |
|
| Hybridization protocol |
described in Hu et al., 2005, BioTechniques, 38:121-124
|
| Scan protocol |
Agilent Technologies Scanner G2505C US82800149 Using Feature Extraction Software
|
| Data processing |
Array data was filtered to remove control features and any non-uniform features or population outlier features. Remaining features were averaged to yield a single value for each unique probe. Finally data were log2 transformed, quantile normalized, and adjusted for batch effects using ComBat.
|
| |
|
| Submission date |
Dec 20, 2012 |
| Last update date |
Feb 07, 2013 |
| Contact name |
Bryan Welm |
| E-mail(s) |
Bryan.Welm@hci.utah.edu
|
| Phone |
801-587-4633
|
| Organization name |
University of Utah, Huntsman Cancer Institute
|
| Department |
Oncological Science
|
| Lab |
Bryan Welm Lab
|
| Street address |
2000 Circle of Hope Drive
|
| City |
Salt Lake City |
| State/province |
UT |
| ZIP/Postal code |
84112 |
| Country |
USA |
| |
|
| Platform ID |
GPL7202 |
| Series (1) |
| GSE40001 |
Targeting PyMT oncogene to diverse mammary cell populations enhances tumor heterogeneity and generates rare breast cancer subtypes |
|
