|
| Status |
Public on Dec 06, 2012 |
| Title |
Genomic DNA from colon biopsy 59 |
| Sample type |
genomic |
| |
|
| Source name |
colon biopsy, adenocarcinoma
|
| Organism |
Homo sapiens |
| Characteristics |
tissue: colon adenocarcinoma
cancer patient: yes
sample name: 71p2
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
Genomic DNA was extracted and purified from frozen samples using Qiagen.
|
| Label |
Cy5 and Cy3
|
| Label protocol |
Standard Illumina protocol.
|
| |
|
| Hybridization protocol |
Bisulphite-converted DNA was amplified, fragmented and hybridised to Illumina HumanMethylation450 Beadchips using the standard Illumina protocol.
|
| Scan protocol |
Arrays were imaged using iScan Reader using the standard recommended Illumina scanner setting.
|
| Description |
Colon adenocarcinoma.
|
| Data processing |
GenomeStudio Software v2011.1. Average Beta values were normalized using internal controls.
|
| |
|
| Submission date |
Dec 05, 2012 |
| Last update date |
Dec 06, 2012 |
| Contact name |
Vladimir Naumov |
| E-mail(s) |
vnaumov@niifhm.ru
|
| Phone |
0079156727733
|
| Organization name |
Research Institute of Physico-Chemical Medicine
|
| Department |
Molecular Biology
|
| Lab |
Human Genetics
|
| Street address |
Malaya Pirogovskaya 1a
|
| City |
Moscow |
| ZIP/Postal code |
119435 |
| Country |
Russia |
| |
|
| Platform ID |
GPL13534 |
| Series (1) |
| GSE42752 |
Epigenetic analysis of normal colon epithelium and colon adenocarcinoma |
|
