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Sample GSM1049422 Query DataSets for GSM1049422
Status Public on Dec 06, 2012
Title Genomic DNA from colon biopsy 56
Sample type genomic
 
Source name colon biopsy, adenocarcinoma
Organism Homo sapiens
Characteristics tissue: colon adenocarcinoma
cancer patient: yes
sample name: 81p2
Extracted molecule genomic DNA
Extraction protocol Genomic DNA was extracted and purified from frozen samples using Qiagen.
Label Cy5 and Cy3
Label protocol Standard Illumina protocol.
 
Hybridization protocol Bisulphite-converted DNA was amplified, fragmented and hybridised to Illumina HumanMethylation450 Beadchips using the standard Illumina protocol.
Scan protocol Arrays were imaged using iScan Reader using the standard recommended Illumina scanner setting.
Description Colon adenocarcinoma.
Data processing GenomeStudio Software v2011.1. Average Beta values were normalized using internal controls.
 
Submission date Dec 05, 2012
Last update date Dec 06, 2012
Contact name Vladimir Naumov
E-mail(s) vnaumov@niifhm.ru
Phone 0079156727733
Organization name Research Institute of Physico-Chemical Medicine
Department Molecular Biology
Lab Human Genetics
Street address Malaya Pirogovskaya 1a
City Moscow
ZIP/Postal code 119435
Country Russia
 
Platform ID GPL13534
Series (1)
GSE42752 Epigenetic analysis of normal colon epithelium and colon adenocarcinoma

Data table header descriptions
ID_REF
VALUE Normalized Average Beta
Detection Pval

Data table
ID_REF VALUE Detection Pval
cg00000029 0.3131 0.0000
cg00000108 0.9131 0.0000
cg00000109 0.8444 0.0000
cg00000165 0.3106 0.0000
cg00000236 0.7933 0.0000
cg00000289 0.5193 0.0000
cg00000292 0.7245 0.0000
cg00000321 0.3554 0.0000
cg00000363 0.2766 0.0000
cg00000622 0.0161 0.0000
cg00000658 0.8177 0.0000
cg00000714 0.1612 0.0000
cg00000721 0.8913 0.0000
cg00000734 0.0882 0.0000
cg00000769 0.0424 0.0000
cg00000807 0.7980 0.0000
cg00000884 0.7924 0.0000
cg00000905 0.1267 0.0000
cg00000924 0.6365 0.0000
cg00000948 0.8907 0.0000

Total number of rows: 485577

Table truncated, full table size 11863 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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