|
Status |
Public on Dec 06, 2012 |
Title |
Genomic DNA from colon biopsy 32 |
Sample type |
genomic |
|
|
Source name |
colon biopsy, from cancer patient, normal
|
Organism |
Homo sapiens |
Characteristics |
tissue: normal colon cancer patient: yes sample name: 77p1
|
Extracted molecule |
genomic DNA |
Extraction protocol |
Genomic DNA was extracted and purified from frozen samples using Qiagen.
|
Label |
Cy5 and Cy3
|
Label protocol |
Standard Illumina protocol.
|
|
|
Hybridization protocol |
Bisulphite-converted DNA was amplified, fragmented and hybridised to Illumina HumanMethylation450 Beadchips using the standard Illumina protocol.
|
Scan protocol |
Arrays were imaged using iScan Reader using the standard recommended Illumina scanner setting.
|
Description |
Normal colon (from cancer patient).
|
Data processing |
GenomeStudio Software v2011.1. Average Beta values were normalized using internal controls.
|
|
|
Submission date |
Dec 05, 2012 |
Last update date |
Dec 06, 2012 |
Contact name |
Vladimir Naumov |
E-mail(s) |
vnaumov@niifhm.ru
|
Phone |
0079156727733
|
Organization name |
Research Institute of Physico-Chemical Medicine
|
Department |
Molecular Biology
|
Lab |
Human Genetics
|
Street address |
Malaya Pirogovskaya 1a
|
City |
Moscow |
ZIP/Postal code |
119435 |
Country |
Russia |
|
|
Platform ID |
GPL13534 |
Series (1) |
GSE42752 |
Epigenetic analysis of normal colon epithelium and colon adenocarcinoma |
|