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Sample GSM1035 Query DataSets for GSM1035
Status Public on Feb 12, 2002
Title DBY7286 37degree heat - 20 min
Sample type RNA
 
Channel 1
Source name time = 0 min (at 30 degrees)
Organism Saccharomyces cerevisiae
Extracted molecule total RNA
 
Channel 2
Source name time = 20 min (at 37 degrees)
Organism Saccharomyces cerevisiae
Extracted molecule total RNA
 
 
Description ScanAlyze version 2.33 scanning software was used.
Keywords = starvation
Keywords = YPD-stationary-phase
Lot batch = y11-84
 
Submission date Feb 08, 2002
Last update date May 27, 2005
Organization Stanford Microarray Database (SMD)
E-mail(s) array@genome.stanford.edu
Phone 650-498-6012
URL http://genome-www5.stanford.edu/
Department Stanford University, School of Medicine
Street address 300 Pasteur Drive
City Stanford
State/province CA
ZIP/Postal code 94305
Country USA
 
Platform ID GPL51
Series (1)
GSE18 Yeast Stress Response

Data table header descriptions
ID_REF reference identifier
CH1B_MEAN mean of channel 1 background pixels
CH1B_MEDIAN median of channel 1 background pixels
CH1D_MEAN difference between CH1I_MEAN and CH1B_MEAN
CH2I_MEAN mean of channel 2 signal pixels
CH2D_MEAN difference of CH2I_MEAN and CH2B_MEAN
CH2B_MEAN mean of channel 2 background pixels
CH2B_MEDIAN median of channel 2 background pixels
CH2BN_MEDIAN normalized CH2B_MEDIAN
CH2DN_MEAN normalized CH2D_MEAN
CH2IN_MEAN normalized CH2I_MEAN
CORR simple correlation coefficient of channel 1 and channel 2 pixels
FLAG user defined flag (default=0)
VALUE aka LOG_RAT2N_MEAN, or log2 of ratio of CH2DN_MEAN and CH1DN_MEAN
PIX_RAT2_MEDIAN
PERGTBCH1I_1SD standard deviation of fraction of pixels greater than CH1B_MEAN
PERGTBCH2I_1SD standard deviation of fraction of pixels greater than CH2B_MEAN
RAT1_MEAN ratio of CH1D_MEAN to CH2D_MEAN
RAT1N_MEAN ratio of CH1DN_MEAN to CH2DN_MEAN
RAT2_MEAN arithmetic mean of ratios of CH2D_MEAN to CH1D_MEAN
RAT2N_MEAN arithmetic mean of ratios of CH2DN_MEAN to CH1DN_MEAN
REGR slope of the simple regression line of channel 2 to channel 1 pixels
TOT_BPIX total number of background pixels
TOT_SPIX total number of signal (spot) pixels
TOP vertical, short-axis spot ellipse minimum pixel coordinate
BOT vertical, short-axis spot ellipse maximum pixel coordinate
LEFT horizontal, long-axis spot ellipse minimum pixel coordinate
RIGHT horizontal, long-axis spot ellipse maximum pixel coordinate

Data table
ID_REF CH1B_MEAN CH1B_MEDIAN CH1D_MEAN CH2I_MEAN CH2D_MEAN CH2B_MEAN CH2B_MEDIAN CH2BN_MEDIAN CH2DN_MEAN CH2IN_MEAN CORR FLAG VALUE PIX_RAT2_MEDIAN PERGTBCH1I_1SD PERGTBCH2I_1SD RAT1_MEAN RAT1N_MEAN RAT2_MEAN RAT2N_MEAN REGR TOT_BPIX TOT_SPIX TOP BOT LEFT RIGHT
1 61 59 256 148 110 41 38 40 116 156 .811 0 -1.142 .476 62 63 2.327 2.207 .43 .453 .36 1013 225 83 100 103 120
2 61 58 106 139 101 39 38 40 106 146 .872 0 0 1 40 42 1.05 1 .953 1 .85 778 225 82 99 120 137
3 55 52 778 889 853 37 36 38 898 936 .942 0 .207 1.124 62 68 .912 .866 1.096 1.154 1.029 746 225 82 99 138 155
4 52 50 7 47 13 37 34 36 13 49 .442 0 .893 1 17 30 .538 .538 1.857 1.857 .46 786 225 82 99 155 172
5 51 49 464 565 529 38 36 38 557 595 .931 0 .264 1.111 56 65 .877 .833 1.14 1.2 1.022 774 220 82 99 174 191
6 51 48 10 45 7 38 38 40 7 47 .639 0 -.515 .857 16 23 1.429 1.429 .7 .7 .621 727 225 82 99 190 207
7 49 46 4 35 1 36 34 36 1 37 .021 0 -2 1 21 24 4 4 .25 .25 .017 730 225 82 99 208 225
8 46 44 3 32 3 32 29 31 3 34 .102 0 0 1 20 28 1 1 1 1 .086 720 225 82 99 225 242
9 45 42 3 32 6 29 26 27 7 34 .156 0 1.222 .818 20 29 .5 .429 2 2.333 .139 720 225 82 99 243 260
10 40 36 3 26 2 26 24 25 2 27 .042 0 -.585 .576 21 25 1.5 1.5 .667 .667 .03 720 225 82 99 260 277
11 36 33 5 28 3 27 25 26 3 29 .084 0 -.737 1.357 25 28 1.667 1.667 .6 .6 .083 766 225 81 98 278 295
12 37 34 3 27 1 27 26 27 1 28 -.055 0 -1.585 .688 24 23 3 3 .333 .333 -.041 756 225 81 98 295 312
13 36 34 2 27 2 27 25 26 2 28 .151 0 0 1 19 29 1 1 1 1 .145 756 225 81 98 313 330
14 37 34 3 25 26 25 26 26 -.039 0 .706 24 24 -.031 756 225 81 98 330 347
15 35 33 3 26 2 27 24 25 2 27 -.016 0 -.585 .667 27 22 1.5 1.5 .667 .667 -.012 746 225 81 98 348 365
16 37 35 4 30 4 28 26 27 5 32 .109 0 .322 .8 27 22 1 .8 1 1.25 .174 731 225 81 98 365 382
17 37 34 4 30 5 29 25 26 6 32 -.011 0 .585 .85 27 30 .8 .667 1.25 1.5 -.01 720 225 81 98 383 400
18 36 33 5 25 2 26 23 24 2 26 .013 0 -1.322 .75 29 22 2.5 2.5 .4 .4 .01 720 225 81 98 400 417
19 35 32 5 27 3 26 24 25 3 28 .023 0 -.737 .786 29 28 1.667 1.667 .6 .6 .019 720 225 81 98 418 435
20 36 33 4 28 5 26 23 24 5 29 .008 0 .322 .886 28 31 .8 .8 1.25 1.25 .007 756 225 80 97 435 452

Total number of rows: 9216

Table truncated, full table size 1020 Kbytes.




Supplementary data files not provided
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