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Sample GSM1027670 Query DataSets for GSM1027670
Status Public on Feb 04, 2015
Title BM_MSC_1
Sample type genomic
Source name Mesenchymal stem and progenitor cells (MSPCs) from human bone marrow
Organism Homo sapiens
Characteristics cell type: Mesenchymal stem and progenitor cells (MSPCs)
passage: 2
Extracted molecule genomic DNA
Extraction protocol Genomic DNA was isolated from 5x10E6 cells using the Qiagen DNA Blood Mini Kit.
Label Cy5 and Cy3
Label protocol Standard Infinium HD Methylation Assay protocol
Hybridization protocol Bisulfite converted DNA was amplified, fragmented and hybridized to Illumina Infinium HumanMethylation450 Beadchip using standard Infinium HD Methylation Assay protocol.
Scan protocol Standard Infinium HD Methylation Assay protocol
Description plastic adherent cells
Data processing Initial analysis was performed by the Genomestudio 2010.3 (Modul M Version 1.8.5). Data were normalized with internal controls according to Illumina┬┤s standard procedures. Methylation level at each locus was calculated with the GenomeStudio Methylation module as beta-value (ranging from 0 to 1). The number of beads per feature varies between chips and beta-values were calculated as average of at least three technical replica.
Submission date Oct 31, 2012
Last update date Feb 04, 2015
Contact name Andreas Reinisch
Phone +43 31638572930
Organization name Medical University of Graz
Department Dept. of Internal Medicine, Division of Hematology, Stem Cell Research Unit
Street address Auenbruggerplatz 38
City Graz
ZIP/Postal code 8036
Country Austria
Platform ID GPL13534
Series (1)
GSE41933 Human bone and marrow niche formation by mesenchymal progenitors in vivo is predefined by an organotypic epigenetic signature

Data table header descriptions
VALUE Average Beta
Detection Pval

Data table
ID_REF VALUE Detection Pval
cg00000029 0.3053302 0
cg00000108 0.8907438 0
cg00000109 0.7958256 0
cg00000165 0.2015461 0
cg00000236 0.839957 0
cg00000289 0.5492513 0
cg00000292 0.2694643 0
cg00000321 0.4251054 0
cg00000363 0.2250436 0
cg00000622 0.01942527 0
cg00000658 0.8046009 0
cg00000714 0.1148068 0
cg00000721 0.8996378 0
cg00000734 0.1049872 0
cg00000769 0.0443159 0
cg00000807 0.7476555 0
cg00000884 0.8687149 0
cg00000905 0.1169807 0
cg00000924 0.4585075 0
cg00000948 0.8612247 0

Total number of rows: 485577

Table truncated, full table size 11002 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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