NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM1024913 Query DataSets for GSM1024913
Status Public on Feb 22, 2013
Title 590-G
Sample type genomic
 
Source name post mortem frontal cortex
Organism Homo sapiens
Characteristics suicide status (1 = suicide, 0 = no): 1
diagnosis: Depression
Sex: Male
race: African
age: 46
pmi: 19
Extracted molecule genomic DNA
Extraction protocol All genomic DNA from nuclei was isolated with the MasterPure DNA Purification Kit (Epicentre Biotechnologies) according to manufacturer's instructions.
Label Cy3, Cy5
Label protocol Standard Illumina protocol
 
Hybridization protocol Bisulfite-converted DNA was fragmented and hybridized to Illumina Infinium Human Methylation450 Beadchip Kit according to manfacturer's manual
Scan protocol Polymer-coated chips were image-processed in Illumina's iScan scanner
Description 39_590-G(P1D3)_7786915019_R03C01
Data processing Data were extracted using Methylation Module of GenomeStudio v1.0 Software
 
Submission date Oct 24, 2012
Last update date Aug 21, 2013
Contact name Jerry Guintivano
E-mail(s) jchoa002@umaryland.edu
Organization name Johns Hopkins University
Street address 720 Rutland Avenue, Ross 1068
City Baltimore
State/province MD
ZIP/Postal code 21205
Country USA
 
Platform ID GPL13534
Series (1)
GSE41826 A Cell Epigenotype Specific Model for the Correction of Cellular Heterogeneity in the Brain

Data table header descriptions
ID_REF
VALUE beta6 normalized measures used in subsequent analyses to derive conclusions
Detection Pval

Data table
ID_REF VALUE Detection Pval
cg00000029 0.604095109338814 0
cg00000108 0.936037246774683 0
cg00000109 0.766807958090028 0
cg00000165 0.280569543355232 0
cg00000236 0.904008123740606 0
cg00000289 0.663594848214494 0
cg00000292 0.56413070243444 0
cg00000321 0.68771100775914 0
cg00000363 0.210119201449471 0
cg00000622 0.0477183024861746 0
cg00000658 0.80759662516615 0
cg00000714 0.211897215429248 0
cg00000721 0.918042139198706 0
cg00000734 0.104235360012027 0
cg00000769 0.107360290994612 0
cg00000807 0.917344527856284 0
cg00000884 0.887160076217299 0
cg00000905 0.103419681121738 0
cg00000924 0.567612320951641 0
cg00000948 0.903370392357288 0

Total number of rows: 480492

Table truncated, full table size 14590 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap