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Sample GSM1020 Query DataSets for GSM1020
Status Public on Feb 12, 2002
Title 25C -- 30 min
Sample type RNA
 
Channel 1
Source name 37C
Organism Saccharomyces cerevisiae
Extracted molecule total RNA
 
Channel 2
Source name 25C - 30 min
Organism Saccharomyces cerevisiae
Extracted molecule total RNA
 
 
Description 25C - 30 min
ScanAlyze version 2.44 scanning software was used.
Keywords = starvation
Keywords = YPD-stationary-phase
Lot batch = y16-58
 
Submission date Feb 08, 2002
Last update date Nov 21, 2005
Organization Stanford Microarray Database (SMD)
E-mail(s) array@genome.stanford.edu
Phone 650-498-6012
URL http://genome-www5.stanford.edu/
Department Stanford University, School of Medicine
Street address 300 Pasteur Drive
City Stanford
State/province CA
ZIP/Postal code 94305
Country USA
 
Platform ID GPL56
Series (1)
GSE18 Yeast Stress Response

Data table header descriptions
ID_REF reference identifier
CH1B_MEAN mean of channel 1 background pixels
CH1B_MEDIAN median of channel 1 background pixels
CH1D_MEAN difference between CH1I_MEAN and CH1B_MEAN
CH2I_MEAN mean of channel 2 signal pixels
CH2D_MEAN difference of CH2I_MEAN and CH2B_MEAN
CH2B_MEAN mean of channel 2 background pixels
CH2B_MEDIAN median of channel 2 background pixels
CH2BN_MEDIAN normalized CH2B_MEDIAN
CH2DN_MEAN normalized CH2D_MEAN
CH2IN_MEAN normalized CH2I_MEAN
CORR simple correlation coefficient of channel 1 and channel 2 pixels
FLAG user defined flag (default=0)
VALUE same as UNF_VALUE but with flagged values removed
PIX_RAT2_MEDIAN
PERGTBCH1I_1SD standard deviation of fraction of pixels greater than CH1B_MEAN
PERGTBCH2I_1SD standard deviation of fraction of pixels greater than CH2B_MEAN
RAT1_MEAN ratio of CH1D_MEAN to CH2D_MEAN
RAT1N_MEAN ratio of CH1DN_MEAN to CH2DN_MEAN
RAT2_MEAN arithmetic mean of ratios of CH2D_MEAN to CH1D_MEAN
RAT2N_MEAN arithmetic mean of ratios of CH2DN_MEAN to CH1DN_MEAN
REGR slope of the simple regression line of channel 2 to channel 1 pixels
TOT_BPIX total number of background pixels
TOT_SPIX total number of signal (spot) pixels
TOP vertical, short-axis spot ellipse minimum pixel coordinate
BOT vertical, short-axis spot ellipse maximum pixel coordinate
LEFT horizontal, long-axis spot ellipse minimum pixel coordinate
RIGHT horizontal, long-axis spot ellipse maximum pixel coordinate
UNF_VALUE aka LOG_RAT2N_MEAN, or log2 of ratio of CH2DN_MEAN and CH1DN_MEAN

Data table
ID_REF CH1B_MEAN CH1B_MEDIAN CH1D_MEAN CH2I_MEAN CH2D_MEAN CH2B_MEAN CH2B_MEDIAN CH2BN_MEDIAN CH2DN_MEAN CH2IN_MEAN CORR FLAG VALUE PIX_RAT2_MEDIAN PERGTBCH1I_1SD PERGTBCH2I_1SD RAT1_MEAN RAT1N_MEAN RAT2_MEAN RAT2N_MEAN REGR TOT_BPIX TOT_SPIX TOP BOT LEFT RIGHT UNF_VALUE
1 503 499 1261 1188 783 407 405 547 1058 1605 .813 0 -.253 .612 58 54 1.61 1.192 .621 .839 .456 1129 177 133 148 107 122 -.253
2 534 513 3151 6271 5873 401 398 537 7937 8474 .813 0 1.333 1.739 59 71 .537 .397 1.864 2.519 1.357 937 177 133 148 123 138 1.333
3 554 531 1166 1787 1391 399 396 535 1879 2414 .812 0 .688 1.104 58 71 .838 .621 1.193 1.611 .838 992 177 133 148 140 155 .688
4 575 552 821 1021 624 408 397 536 843 1379 .781 0 .038 .628 57 58 1.316 .974 .76 1.027 .55 1038 156 133 147 159 173 .038
5 548 527 1095 1149 758 402 391 528 1024 1552 .735 0 -.097 .675 67 78 1.445 1.069 .692 .935 .467 1007 156 133 147 178 192 -.097
6 517 501 1781 1084 701 388 383 517 947 1464 .792 0 -.911 .309 64 48 2.541 1.881 .394 .532 .368 936 177 133 148 195 210 -.911
7 508 501 252 625 244 384 381 514 330 844 .751 0 .389 .829 34 40 1.033 .764 .968 1.31 .594 899 177 133 148 213 228 .389
8 531 528 1163 1436 1055 387 381 514 1426 1940 .865 0 .294 .835 57 57 1.102 .816 .907 1.226 .744 883 177 133 148 230 245 .294
9 547 535 310 637 258 412 379 512 348 860 .385 0 .167 .839 37 40 1.202 .891 .832 1.123 .419 897 177 133 148 247 262 .167
10 543 524 359 556 177 409 379 512 239 751 .296 0 -.587 .586 43 36 2.028 1.502 .493 .666 .293 899 177 133 148 265 280 -.587
11 553 532 753 1252 881 402 371 501 1190 1691 .768 0 .66 1.129 61 60 .855 .633 1.17 1.58 .968 875 177 133 148 282 297 .66
12 605 578 562 605 232 385 373 504 313 817 .758 0 -.844 .418 50 43 2.422 1.796 .413 .557 .346 973 177 131 146 299 314 -.844
13 608 582 1650 1827 1448 394 379 512 1956 2468 .768 0 .245 .85 54 57 1.14 .844 .878 1.185 .6 1010 177 131 146 317 332 .245
14 550 528 1314 1254 881 392 373 504 1190 1694 .81 0 -.143 .627 59 59 1.491 1.104 .67 .906 .527 946 177 132 147 336 351 -.143
15 521 500 777 2748 2388 384 360 486 3227 3713 .786 0 2.054 2.631 51 59 .325 .241 3.073 4.153 2.057 908 177 132 147 353 368 2.054
16 513 482 1389 1151 792 382 359 485 1070 1555 .796 0 -.376 .567 53 51 1.754 1.298 .57 .77 .436 925 177 132 147 370 385 -.376
17 496 472 977 1127 769 370 358 483 1039 1522 .796 0 .089 .865 51 55 1.27 .94 .787 1.063 .592 938 177 132 147 387 402 .089
18 544 519 1194 887 530 363 357 482 716 1198 .798 0 -.738 .436 67 65 2.253 1.668 .444 .6 .35 950 177 132 147 405 420 -.738
19 605 565 81 402 47 360 355 479 64 543 .185 0 -.34 .359 18 11 1.723 1.266 .58 .79 .096 887 177 134 149 422 437 -.34
20 655 577 663 638 281 374 357 482 380 862 .093 0 -.803 .3 61 38 2.359 1.745 .424 .573 .1 932 177 134 149 439 454 -.803

Total number of rows: 8448

Table truncated, full table size 1027 Kbytes.




Supplementary data files not provided
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