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GEO accession:
Sample GSM1014511
Query DataSets for GSM1014511
Status
Public on Oct 03, 2012
Title
UW_DnaseDgf_HEEpiC
Sample type
SRA
Source name
HEEpiC
Organism
Homo sapiens
Characteristics
lab: UW
lab description: Stamatoyannopoulous - University of Washington
datatype: DnaseDgf
datatype description: DNase Digital Footprinting
cell: HEEpiC
cell organism: human
cell description: esophageal epithelial cells
cell karyotype: normal
cell lineage: endoderm
cell sex: U
labexpid: DS12763
labversion: Hotspot-v5.2,lmax-v1.0,WindowDensity-bin20-win+/-75
Biomaterial provider
ScienCell
Growth protocol
HEEpiC_Stam_protocol.pdf
Extracted molecule
genomic DNA
Extraction protocol
For more information, see
http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeUwDgf
Library strategy
DNase-Hypersensitivity
Library source
genomic
Library selection
DNAse
Instrument model
Illumina HiSeq 2000
Data processing
http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeUwDgf
Submission date
Oct 03, 2012
Last update date
May 15, 2019
Contact name
ENCODE DCC
E-mail(s)
encode-help@lists.stanford.edu
Organization name
ENCODE DCC
Street address
300 Pasteur Dr
City
Stanford
State/province
CA
ZIP/Postal code
94305-5120
Country
USA
Platform ID
GPL11154
Series (1)
GSE26328
DNaseI Digital Genomic Footprinting from ENCODE/University of Washington [Human]
Relations
SRA
SRX193583
BioSample
SAMN01761091
Named Annotation
GSM1014511_hg19_wgEncodeUwDgfHeeRaw.bigWig
Named Annotation
GSM1014511_hg19_wgEncodeUwDgfHeeSig.bigWig
Supplementary file
Size
Download
File type/resource
GSM1014511_hg19_wgEncodeUwDgfHeeHotspots.broadPeak.gz
4.5 Mb
(ftp)
(http)
BROADPEAK
GSM1014511_hg19_wgEncodeUwDgfHeePk.narrowPeak.gz
3.4 Mb
(ftp)
(http)
NARROWPEAK
GSM1014511_hg19_wgEncodeUwDgfHeeRaw.bigWig
352.1 Mb
(ftp)
(http)
BIGWIG
GSM1014511_hg19_wgEncodeUwDgfHeeSig.bigWig
570.3 Mb
(ftp)
(http)
BIGWIG
SRA Run Selector
Raw data are available in SRA
Processed data provided as supplementary file
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