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Sample GSM1014153 Query DataSets for GSM1014153
Status Public on Oct 03, 2012
Title UW_DnaseSeq_CH12_immortalized_B10.H-2aH-4bp/Wts
Sample type SRA
 
Source name CH12
Organism Mus musculus
Characteristics lab: UW-m
lab description: Stamatoyannopoulous - University of Washington
datatype: DnaseSeq
datatype description: DNaseI HS Sequencing
line: CH12
cell organism: mouse
cell description: B-cell lymphoma (GM12878 analog)
cell sex: F
age: immortalized
biomaterial_type: immortalized cell line
strain: B10.H-2aH-4bp/Wts
strain description: Derived by inbreeding from selected F2 progeny of B10.A X B10.129
age: immortalized
biomaterial_type: immortalized cell line
labexpid: DS22536,DS22542
labversion: 1,Hotspot-v5.2,lmax-v1.1,WindowDensity-bin20-win+/-75
replicate: 1,2
strain description: Derived by inbreeding from selected F2 progeny of B10.A X B10.129
Biomaterial provider Weissman lab
Extracted molecule genomic DNA
Extraction protocol Instrument model unknown. ("Illumina Genome Analyzer" specified by default). For more information, see http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=mm9&g=wgEncodeUwDnase
 
Library strategy DNase-Hypersensitivity
Library source genomic
Library selection DNAse
Instrument model Illumina Genome Analyzer
 
Data processing http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=mm9&g=wgEncodeUwDnase
 
Submission date Oct 03, 2012
Last update date May 15, 2019
Contact name ENCODE DCC
E-mail(s) encode-help@lists.stanford.edu
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
 
Platform ID GPL9185
Series (4)
GSE37074 DNaseI Hypersensitivity by Digital DNaseI from ENCODE/University of Washington
GSE49847 A comparative encyclopedia of DNA elements in the mouse genome
GSE51334 DNA replication-timing boundaries separate stable chromosome domains with cell-type-specific functions
Relations
SRA SRX191011
BioSample SAMN01757921
Named Annotation GSM1014153_mm9_wgEncodeUwDnaseCh122a4bFImmortalSigRep1.bigWig
Named Annotation GSM1014153_mm9_wgEncodeUwDnaseCh122a4bFImmortalSigRep2.bigWig

Supplementary file Size Download File type/resource
GSM1014153_mm9_wgEncodeUwDnaseCh122a4bFImmortalHotspotsRep1.broadPeak.gz 2.9 Mb (ftp)(http) BROADPEAK
GSM1014153_mm9_wgEncodeUwDnaseCh122a4bFImmortalHotspotsRep2.broadPeak.gz 2.9 Mb (ftp)(http) BROADPEAK
GSM1014153_mm9_wgEncodeUwDnaseCh122a4bFImmortalPkRep1.narrowPeak.gz 2.0 Mb (ftp)(http) NARROWPEAK
GSM1014153_mm9_wgEncodeUwDnaseCh122a4bFImmortalPkRep2.narrowPeak.gz 1.5 Mb (ftp)(http) NARROWPEAK
GSM1014153_mm9_wgEncodeUwDnaseCh122a4bFImmortalSigRep1.bigWig 212.5 Mb (ftp)(http) BIGWIG
GSM1014153_mm9_wgEncodeUwDnaseCh122a4bFImmortalSigRep2.bigWig 112.9 Mb (ftp)(http) BIGWIG
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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