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Sample GSM1009894 Query DataSets for GSM1009894
Status Public on Oct 19, 2012
Title genomic DNA from whole blood 5
Sample type genomic
Source name whole blood 5
Organism Homo sapiens
Characteristics gender: Male
sample type: whole blood
plate: PLATE A
sentrix barcode: 5773467012
sentrix position: R03C02
well id: E09
age: 23
diseasestatus (1=control, 2=scz patient): 2
used_in_analysis: yes
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from fresh frozen tissue using Qiagen DNeasy Kit according to standard instructions
Label Cy3, Cy5
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Description normal whole blood sample
Data processing BeadStudio software v3.2. The raw data (non-normalized Unmethylated and Methylated signal intensities) are not available.
Submission date Sep 26, 2012
Last update date Oct 19, 2012
Contact name Steve Horvath
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
Platform ID GPL13534
Series (1)
GSE41169 Blood DNA methylation profiles in a Dutch population

Data table header descriptions
VALUE Average Beta

Data table
ID_REF VALUE Intensity
cg00000029 0.3983607 6000
cg00000108 0.9488279 19266
cg00000109 0.8842016 10496
cg00000165 0.147505 9459
cg00000236 0.6676435 11502
cg00000289 0.650348 4210
cg00000292 0.8069324 20499
cg00000321 0.2712435 20118
cg00000363 0.3484627 26603
cg00000622 0.02483144 27486
cg00000658 0.8435446 17854
cg00000714 0.2217252 36337
cg00000721 0.9117084 14001
cg00000734 0.06046123 21451
cg00000769 0.03269394 18772
cg00000807 0.7823446 30361
cg00000884 0.851588 9724
cg00000905 0.07315531 12558
cg00000924 0.5063804 32970
cg00000948 0.8701229 24223

Total number of rows: 485577

Table truncated, full table size 12846 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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