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Sample GSM1009893 Query DataSets for GSM1009893
Status Public on Oct 19, 2012
Title genomic DNA from whole blood 4
Sample type genomic
Source name whole blood 4
Organism Homo sapiens
Characteristics gender: Male
sample type: whole blood
plate: PLATE A
sentrix barcode: 5773467012
sentrix position: R03C01
well id: G08
age: 29
diseasestatus (1=control, 2=scz patient): 1
used_in_analysis: yes
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from fresh frozen tissue using Qiagen DNeasy Kit according to standard instructions
Label Cy3, Cy5
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Description normal whole blood sample
Data processing BeadStudio software v3.2. The raw data (non-normalized Unmethylated and Methylated signal intensities) are not available.
Submission date Sep 26, 2012
Last update date Oct 19, 2012
Contact name Steve Horvath
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
Platform ID GPL13534
Series (1)
GSE41169 Blood DNA methylation profiles in a Dutch population

Data table header descriptions
VALUE Average Beta

Data table
ID_REF VALUE Intensity
cg00000029 0.4045264 5865
cg00000108 0.9344619 21048
cg00000109 0.8709862 12170
cg00000165 0.1295126 8764
cg00000236 0.6789979 11875
cg00000289 0.6654267 4739
cg00000292 0.8111095 20801
cg00000321 0.2887301 18232
cg00000363 0.358329 26758
cg00000622 0.01484386 29744
cg00000658 0.8464888 17586
cg00000714 0.2076227 33615
cg00000721 0.9177611 14747
cg00000734 0.04998023 20128
cg00000769 0.04421249 20211
cg00000807 0.8274953 30989
cg00000884 0.8530864 11240
cg00000905 0.06842924 15332
cg00000924 0.5152292 32272
cg00000948 0.8807966 24354

Total number of rows: 485577

Table truncated, full table size 12849 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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