|
| Status |
Public on Oct 19, 2012 |
| Title |
genomic DNA from whole blood 3 |
| Sample type |
genomic |
| |
|
| Source name |
whole blood 3
|
| Organism |
Homo sapiens |
| Characteristics |
gender: Male
sample type: whole blood
plate: PLATE A
sentrix barcode: 5773475014
sentrix position: R05C02
well id: C05
age: 29
diseasestatus (1=control, 2=scz patient): 1
used_in_analysis: yes
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
genomic DNA was extracted and purified from fresh frozen tissue using Qiagen DNeasy Kit according to standard instructions
|
| Label |
Cy3, Cy5
|
| Label protocol |
Standard Illumina Protocol
|
| |
|
| Hybridization protocol |
bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
|
| Scan protocol |
Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
|
| Description |
normal whole blood sample
|
| Data processing |
BeadStudio software v3.2. The raw data (non-normalized Unmethylated and Methylated signal intensities) are not available.
|
| |
|
| Submission date |
Sep 26, 2012 |
| Last update date |
Oct 19, 2012 |
| Contact name |
Steve Horvath |
| E-mail(s) |
shorvath@altoslabs.com
|
| Organization name |
University of California, Los Angeles
|
| Department |
Human Genetics
|
| Lab |
Horvath
|
| Street address |
695 Charles E. Young Drive South, Box 708822
|
| City |
Los Angeles |
| State/province |
CA |
| ZIP/Postal code |
90095-7088 |
| Country |
USA |
| |
|
| Platform ID |
GPL13534 |
| Series (1) |
| GSE41169 |
Blood DNA methylation profiles in a Dutch population |
|
