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Sample GSM1009892 Query DataSets for GSM1009892
Status Public on Oct 19, 2012
Title genomic DNA from whole blood 3
Sample type genomic
Source name whole blood 3
Organism Homo sapiens
Characteristics gender: Male
sample type: whole blood
plate: PLATE A
sentrix barcode: 5773475014
sentrix position: R05C02
well id: C05
age: 29
diseasestatus (1=control, 2=scz patient): 1
used_in_analysis: yes
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from fresh frozen tissue using Qiagen DNeasy Kit according to standard instructions
Label Cy3, Cy5
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Description normal whole blood sample
Data processing BeadStudio software v3.2. The raw data (non-normalized Unmethylated and Methylated signal intensities) are not available.
Submission date Sep 26, 2012
Last update date Oct 19, 2012
Contact name Steve Horvath
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
Platform ID GPL13534
Series (1)
GSE41169 Blood DNA methylation profiles in a Dutch population

Data table header descriptions
VALUE Average Beta

Data table
ID_REF VALUE Intensity
cg00000029 0.4620846 6942
cg00000108 0.925136 24892
cg00000109 0.8843849 14751
cg00000165 0.1529237 9990
cg00000236 0.7512577 14212
cg00000289 0.6093154 4881
cg00000292 0.8032665 25371
cg00000321 0.2012363 21740
cg00000363 0.3381254 31619
cg00000622 0.01166248 34541
cg00000658 0.8597378 18508
cg00000714 0.2428354 44564
cg00000721 0.952926 16151
cg00000734 0.06147309 28140
cg00000769 0.03170702 24721
cg00000807 0.8336614 38514
cg00000884 0.865752 11781
cg00000905 0.05522742 16323
cg00000924 0.5001478 40506
cg00000948 0.8860492 32572

Total number of rows: 485577

Table truncated, full table size 12864 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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