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Sample GSM1009891 Query DataSets for GSM1009891
Status Public on Oct 19, 2012
Title genomic DNA from whole blood 2
Sample type genomic
Source name whole blood 2
Organism Homo sapiens
Characteristics gender: Male
sample type: whole blood
plate: PLATE A
sentrix barcode: 5773467003
sentrix position: R05C02
well id: C08
age: 29
diseasestatus (1=control, 2=scz patient): 2
used_in_analysis: yes
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from fresh frozen tissue using Qiagen DNeasy Kit according to standard instructions
Label Cy3, Cy5
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Description normal whole blood sample
Data processing BeadStudio software v3.2. The raw data (non-normalized Unmethylated and Methylated signal intensities) are not available.
Submission date Sep 26, 2012
Last update date Oct 19, 2012
Contact name Steve Horvath
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
Platform ID GPL13534
Series (1)
GSE41169 Blood DNA methylation profiles in a Dutch population

Data table header descriptions
VALUE Average Beta

Data table
ID_REF VALUE Intensity
cg00000029 0.3861216 8633
cg00000108 0.9316843 26219
cg00000109 0.8945636 12353
cg00000165 0.1490069 10423
cg00000236 0.6320869 10677
cg00000289 0.6132479 4580
cg00000292 0.8429859 26076
cg00000321 0.2195003 22474
cg00000363 0.348561 31728
cg00000622 0.01437744 35720
cg00000658 0.8645002 19317
cg00000714 0.2121386 47039
cg00000721 0.9180743 15707
cg00000734 0.06272262 29379
cg00000769 0.03345179 25788
cg00000807 0.8208207 38381
cg00000884 0.8393067 11842
cg00000905 0.07179272 16573
cg00000924 0.4928093 38422
cg00000948 0.8806308 32622

Total number of rows: 485577

Table truncated, full table size 12864 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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