GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
Sample GSM1009890 Query DataSets for GSM1009890
Status Public on Oct 19, 2012
Title genomic DNA from whole blood 1
Sample type genomic
Source name whole blood 1
Organism Homo sapiens
Characteristics gender: Male
sample type: whole blood
plate: PLATE A
sentrix barcode: 5773467014
sentrix position: R01C01
well id: E11
age: 27
diseasestatus (1=control, 2=scz patient): 2
used_in_analysis: yes
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from fresh frozen tissue using Qiagen DNeasy Kit according to standard instructions
Label Cy3, Cy5
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Description normal whole blood sample
Data processing BeadStudio software v3.2. The raw data (non-normalized Unmethylated and Methylated signal intensities) are not available.
Submission date Sep 26, 2012
Last update date Oct 19, 2012
Contact name Steve Horvath
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
Platform ID GPL13534
Series (1)
GSE41169 Blood DNA methylation profiles in a Dutch population

Data table header descriptions
VALUE Average Beta

Data table
ID_REF VALUE Intensity
cg00000029 0.447089 5362
cg00000108 0.9355023 17389
cg00000109 0.8656871 9564
cg00000165 0.1741377 6481
cg00000236 0.6716276 9374
cg00000289 0.5885794 3490
cg00000292 0.8080747 16396
cg00000321 0.3175222 14784
cg00000363 0.3801394 20987
cg00000622 0.02488785 23084
cg00000658 0.8524413 13786
cg00000714 0.2650234 28988
cg00000721 0.9068575 11989
cg00000734 0.06195327 16590
cg00000769 0.02524913 17762
cg00000807 0.8283525 24829
cg00000884 0.8288811 9034
cg00000905 0.07731366 10338
cg00000924 0.5085472 24411
cg00000948 0.8988096 21068

Total number of rows: 485577

Table truncated, full table size 12802 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap