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Sample GSM1009749 Query DataSets for GSM1009749
Status Public on Oct 19, 2012
Title genomic DNA from whole blood 95
Sample type genomic
Source name whole blood 95
Organism Homo sapiens
Characteristics gender: Female
sample type: whole blood
plate: PLATE A
sentrix barcode: 5773467012
sentrix position: R04C01
well id: H08
age: 26
diseasestatus (1=control, 2=scz patient): 1
used_in_analysis: yes
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from fresh frozen tissue using Qiagen DNeasy Kit according to standard instructions
Label Cy3, Cy5
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Description normal whole blood sample
Data processing BeadStudio software v3.2. The raw data (non-normalized Unmethylated and Methylated signal intensities) are not available.
Submission date Sep 26, 2012
Last update date Oct 19, 2012
Contact name Steve Horvath
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
Platform ID GPL13534
Series (1)
GSE41169 Blood DNA methylation profiles in a Dutch population

Data table header descriptions
VALUE Average Beta

Data table
ID_REF VALUE Intensity
cg00000029 0.4777839 7192
cg00000108 0.941342 18738
cg00000109 0.8827493 11030
cg00000165 0.1463186 7370
cg00000236 0.7384061 10164
cg00000289 0.5997365 3695
cg00000292 0.824134 18289
cg00000321 0.2433145 18111
cg00000363 0.367224 27292
cg00000622 0.01738113 34075
cg00000658 0.8920092 15568
cg00000714 0.1946646 38510
cg00000721 0.9361533 12477
cg00000734 0.06418056 26528
cg00000769 0.04859507 23709
cg00000807 0.7933514 32869
cg00000884 0.8718311 9801
cg00000905 0.06278966 13278
cg00000924 0.4379596 32677
cg00000948 0.883323 27309

Total number of rows: 485577

Table truncated, full table size 12835 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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