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Sample GSM1009748 Query DataSets for GSM1009748
Status Public on Oct 19, 2012
Title genomic DNA from whole blood 94
Sample type genomic
Source name whole blood 94
Organism Homo sapiens
Characteristics gender: Male
sample type: whole blood
plate: PLATE A
sentrix barcode: 5773475014
sentrix position: R05C01
well id: E04
age: 20
diseasestatus (1=control, 2=scz patient): 1
used_in_analysis: yes
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from fresh frozen tissue using Qiagen DNeasy Kit according to standard instructions
Label Cy3, Cy5
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Description normal whole blood sample
Data processing BeadStudio software v3.2. The raw data (non-normalized Unmethylated and Methylated signal intensities) are not available.
Submission date Sep 26, 2012
Last update date Oct 19, 2012
Contact name Steve Horvath
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
Platform ID GPL13534
Series (1)
GSE41169 Blood DNA methylation profiles in a Dutch population

Data table header descriptions
VALUE Average Beta

Data table
ID_REF VALUE Intensity
cg00000029 0.4097204 7554
cg00000108 0.9378108 25837
cg00000109 0.8801903 13772
cg00000165 0.1481839 10252
cg00000236 0.6688821 12388
cg00000289 0.6049507 5879
cg00000292 0.8202277 25894
cg00000321 0.2809374 24393
cg00000363 0.3480971 34399
cg00000622 0.0169556 39356
cg00000658 0.8571768 20926
cg00000714 0.2395981 44387
cg00000721 0.9428895 18443
cg00000734 0.05718337 31640
cg00000769 0.0247191 27045
cg00000807 0.8248584 40490
cg00000884 0.8689502 12979
cg00000905 0.06301534 18213
cg00000924 0.5061354 41462
cg00000948 0.8967364 34249

Total number of rows: 485577

Table truncated, full table size 12869 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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