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Sample GSM1009747 Query DataSets for GSM1009747
Status Public on Oct 19, 2012
Title genomic DNA from whole blood 93
Sample type genomic
Source name whole blood 93
Organism Homo sapiens
Characteristics gender: Female
sample type: whole blood
plate: PLATE A
sentrix barcode: 5773475011
sentrix position: R03C02
well id: E06
age: 18
diseasestatus (1=control, 2=scz patient): 1
used_in_analysis: yes
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from fresh frozen tissue using Qiagen DNeasy Kit according to standard instructions
Label Cy3, Cy5
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Description normal whole blood sample
Data processing BeadStudio software v3.2. The raw data (non-normalized Unmethylated and Methylated signal intensities) are not available.
Submission date Sep 26, 2012
Last update date Oct 19, 2012
Contact name Steve Horvath
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
Platform ID GPL13534
Series (1)
GSE41169 Blood DNA methylation profiles in a Dutch population

Data table header descriptions
VALUE Average Beta

Data table
ID_REF VALUE Intensity
cg00000029 0.5161223 4707
cg00000108 0.9199554 20551
cg00000109 0.8928784 9982
cg00000165 0.1363097 6642
cg00000236 0.6992835 10508
cg00000289 0.6038841 3144
cg00000292 0.8622882 16725
cg00000321 0.3496849 13864
cg00000363 0.3888519 19437
cg00000622 0.02047074 24032
cg00000658 0.8831798 12492
cg00000714 0.2567824 28835
cg00000721 0.9218653 14503
cg00000734 0.06472454 16926
cg00000769 0.02513877 18636
cg00000807 0.8705566 26653
cg00000884 0.8630119 7616
cg00000905 0.07677249 11649
cg00000924 0.5342936 26698
cg00000948 0.9196777 20131

Total number of rows: 485577

Table truncated, full table size 12798 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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