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Sample GSM1009746 Query DataSets for GSM1009746
Status Public on Oct 19, 2012
Title genomic DNA from whole blood 92
Sample type genomic
Source name whole blood 92
Organism Homo sapiens
Characteristics gender: Male
sample type: whole blood
plate: PLATE A
sentrix barcode: 5773475011
sentrix position: R03C01
well id: G05
age: 24
diseasestatus (1=control, 2=scz patient): 1
used_in_analysis: yes
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from fresh frozen tissue using Qiagen DNeasy Kit according to standard instructions
Label Cy3, Cy5
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Description normal whole blood sample
Data processing BeadStudio software v3.2. The raw data (non-normalized Unmethylated and Methylated signal intensities) are not available.
Submission date Sep 26, 2012
Last update date Oct 19, 2012
Contact name Steve Horvath
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
Platform ID GPL13534
Series (1)
GSE41169 Blood DNA methylation profiles in a Dutch population

Data table header descriptions
VALUE Average Beta

Data table
ID_REF VALUE Intensity
cg00000029 0.3906723 4853
cg00000108 0.9396749 19096
cg00000109 0.9035842 9442
cg00000165 0.168587 6496
cg00000236 0.6408657 10481
cg00000289 0.4724708 3587
cg00000292 0.8249985 16717
cg00000321 0.2357267 15401
cg00000363 0.373833 22715
cg00000622 0.01562556 27739
cg00000658 0.8471221 12531
cg00000714 0.1699373 31494
cg00000721 0.9010507 13796
cg00000734 0.05184315 20327
cg00000769 0.03456322 20471
cg00000807 0.8090818 25864
cg00000884 0.8362337 8577
cg00000905 0.06345239 12303
cg00000924 0.4778839 27007
cg00000948 0.8863845 20531

Total number of rows: 485577

Table truncated, full table size 12815 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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