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Sample GSM1009745 Query DataSets for GSM1009745
Status Public on Oct 19, 2012
Title genomic DNA from whole blood 91
Sample type genomic
Source name whole blood 91
Organism Homo sapiens
Characteristics gender: Male
sample type: whole blood
plate: PLATE A
sentrix barcode: 5773467012
sentrix position: R06C02
well id: H09
age: 25
diseasestatus (1=control, 2=scz patient): 1
used_in_analysis: yes
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from fresh frozen tissue using Qiagen DNeasy Kit according to standard instructions
Label Cy3, Cy5
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Description normal whole blood sample
Data processing BeadStudio software v3.2. The raw data (non-normalized Unmethylated and Methylated signal intensities) are not available.
Submission date Sep 26, 2012
Last update date Oct 19, 2012
Contact name Steve Horvath
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
Platform ID GPL13534
Series (1)
GSE41169 Blood DNA methylation profiles in a Dutch population

Data table header descriptions
VALUE Average Beta

Data table
ID_REF VALUE Intensity
cg00000029 0.4476482 5449
cg00000108 0.9322827 26806
cg00000109 0.9050999 14273
cg00000165 0.1073817 7974
cg00000236 0.6915532 13562
cg00000289 0.6190085 3551
cg00000292 0.8554025 22556
cg00000321 0.3029558 19421
cg00000363 0.351923 29074
cg00000622 38608
cg00000658 0.8896978 18993
cg00000714 0.2065296 42935
cg00000721 0.931522 17161
cg00000734 0.05722806 28068
cg00000769 0.0332366 25745
cg00000807 0.8374438 38176
cg00000884 0.8564211 12172
cg00000905 0.07202671 19365
cg00000924 0.4603195 39655
cg00000948 0.9091387 26534

Total number of rows: 485577

Table truncated, full table size 12864 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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