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Sample GSM1009744 Query DataSets for GSM1009744
Status Public on Oct 19, 2012
Title genomic DNA from whole blood 90
Sample type genomic
Source name whole blood 90
Organism Homo sapiens
Characteristics gender: Male
sample type: whole blood
plate: PLATE A
sentrix barcode: 5773467014
sentrix position: R03C01
well id: G11
age: 20
diseasestatus (1=control, 2=scz patient): 1
used_in_analysis: yes
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from fresh frozen tissue using Qiagen DNeasy Kit according to standard instructions
Label Cy3, Cy5
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Description normal whole blood sample
Data processing BeadStudio software v3.2. The raw data (non-normalized Unmethylated and Methylated signal intensities) are not available.
Submission date Sep 26, 2012
Last update date Oct 19, 2012
Contact name Steve Horvath
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
Platform ID GPL13534
Series (1)
GSE41169 Blood DNA methylation profiles in a Dutch population

Data table header descriptions
VALUE Average Beta

Data table
ID_REF VALUE Intensity
cg00000029 0.4674797 5804
cg00000108 0.9359841 18083
cg00000109 0.8955364 10564
cg00000165 0.1367477 7593
cg00000236 0.7426415 10500
cg00000289 0.5267582 3469
cg00000292 0.8384592 19344
cg00000321 0.2614145 15538
cg00000363 0.3568202 22480
cg00000622 0.01728219 26517
cg00000658 0.8347079 16997
cg00000714 0.2248196 32197
cg00000721 0.9236459 12473
cg00000734 0.06835622 19708
cg00000769 0.04579457 20754
cg00000807 0.8585099 27697
cg00000884 0.8213985 8209
cg00000905 0.0820087 12545
cg00000924 0.48 28600
cg00000948 0.883284 23213

Total number of rows: 485577

Table truncated, full table size 12820 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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