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Sample GSM1009743 Query DataSets for GSM1009743
Status Public on Oct 19, 2012
Title genomic DNA from whole blood 89
Sample type genomic
Source name whole blood 89
Organism Homo sapiens
Characteristics gender: Male
sample type: whole blood
plate: PLATE A
sentrix barcode: 5773467003
sentrix position: R01C01
well id: A07
age: 27
diseasestatus (1=control, 2=scz patient): 1
used_in_analysis: yes
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from fresh frozen tissue using Qiagen DNeasy Kit according to standard instructions
Label Cy3, Cy5
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Description normal whole blood sample
Data processing BeadStudio software v3.2. The raw data (non-normalized Unmethylated and Methylated signal intensities) are not available.
Submission date Sep 26, 2012
Last update date Oct 19, 2012
Contact name Steve Horvath
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
Platform ID GPL13534
Series (1)
GSE41169 Blood DNA methylation profiles in a Dutch population

Data table header descriptions
VALUE Average Beta

Data table
ID_REF VALUE Intensity
cg00000029 0.4191297 4772
cg00000108 0.9279896 16842
cg00000109 0.8931428 9277
cg00000165 0.1233911 5727
cg00000236 0.7080103 9188
cg00000289 0.595028 3641
cg00000292 0.8171463 14912
cg00000321 0.3135181 13896
cg00000363 0.3453656 19320
cg00000622 0.01937782 22916
cg00000658 0.8526261 13437
cg00000714 0.2402375 31219
cg00000721 0.9144852 11360
cg00000734 0.06266435 17773
cg00000769 0.03724682 16143
cg00000807 0.8081861 24747
cg00000884 0.803898 6570
cg00000905 0.05342881 10793
cg00000924 0.5240353 22887
cg00000948 0.8867997 20801

Total number of rows: 485577

Table truncated, full table size 12787 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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