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Sample GSM1009742 Query DataSets for GSM1009742
Status Public on Oct 19, 2012
Title genomic DNA from whole blood 88
Sample type genomic
Source name whole blood 88
Organism Homo sapiens
Characteristics gender: Male
sample type: whole blood
plate: PLATE A
sentrix barcode: 5773475011
sentrix position: R06C02
well id: H06
age: 25
diseasestatus (1=control, 2=scz patient): 1
used_in_analysis: yes
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from fresh frozen tissue using Qiagen DNeasy Kit according to standard instructions
Label Cy3, Cy5
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Description normal whole blood sample
Data processing BeadStudio software v3.2. The raw data (non-normalized Unmethylated and Methylated signal intensities) are not available.
Submission date Sep 26, 2012
Last update date Oct 19, 2012
Contact name Steve Horvath
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
Platform ID GPL13534
Series (1)
GSE41169 Blood DNA methylation profiles in a Dutch population

Data table header descriptions
VALUE Average Beta

Data table
ID_REF VALUE Intensity
cg00000029 0.4173208 3722
cg00000108 0.9492663 25524
cg00000109 0.8749053 11787
cg00000165 0.1662756 5866
cg00000236 0.6516235 13882
cg00000289 0.5645439 3386
cg00000292 0.8334319 20192
cg00000321 0.2512705 18593
cg00000363 0.3189444 24340
cg00000622 0.02112016 32949
cg00000658 0.8920875 12197
cg00000714 0.1867125 39185
cg00000721 0.8882557 16921
cg00000734 0.05733135 23395
cg00000769 0.02591353 22012
cg00000807 0.8463427 35336
cg00000884 0.8855518 11154
cg00000905 0.05700847 15845
cg00000924 0.509722 34358
cg00000948 0.8955218 25178

Total number of rows: 485577

Table truncated, full table size 12838 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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