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Sample GSM1009741 Query DataSets for GSM1009741
Status Public on Oct 19, 2012
Title genomic DNA from whole blood 87
Sample type genomic
Source name whole blood 87
Organism Homo sapiens
Characteristics gender: Male
sample type: whole blood
plate: PLATE A
sentrix barcode: 5773475011
sentrix position: R04C01
well id: H05
age: 32
diseasestatus (1=control, 2=scz patient): 2
used_in_analysis: yes
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from fresh frozen tissue using Qiagen DNeasy Kit according to standard instructions
Label Cy3, Cy5
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Description normal whole blood sample
Data processing BeadStudio software v3.2. The raw data (non-normalized Unmethylated and Methylated signal intensities) are not available.
Submission date Sep 26, 2012
Last update date Oct 19, 2012
Contact name Steve Horvath
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
Platform ID GPL13534
Series (1)
GSE41169 Blood DNA methylation profiles in a Dutch population

Data table header descriptions
VALUE Average Beta

Data table
ID_REF VALUE Intensity
cg00000029 0.5270092 5213
cg00000108 0.9383667 20668
cg00000109 0.9127592 10606
cg00000165 0.1839442 7212
cg00000236 0.7114614 10876
cg00000289 0.5751168 3541
cg00000292 0.8605505 18430
cg00000321 0.2645345 17066
cg00000363 0.3853346 22361
cg00000622 0.02018376 27001
cg00000658 0.8736398 11755
cg00000714 0.2768137 36206
cg00000721 0.9254389 14881
cg00000734 0.05933587 20107
cg00000769 0.0393214 20118
cg00000807 0.8333445 29890
cg00000884 0.8955963 8779
cg00000905 0.08993728 13932
cg00000924 0.4772077 28221
cg00000948 0.8938709 23362

Total number of rows: 485577

Table truncated, full table size 12820 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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