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Sample GSM1009740 Query DataSets for GSM1009740
Status Public on Oct 19, 2012
Title genomic DNA from whole blood 86
Sample type genomic
Source name whole blood 86
Organism Homo sapiens
Characteristics gender: Female
sample type: whole blood
plate: PLATE A
sentrix barcode: 5773467012
sentrix position: R01C01
well id: E08
age: 26
diseasestatus (1=control, 2=scz patient): 2
used_in_analysis: yes
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from fresh frozen tissue using Qiagen DNeasy Kit according to standard instructions
Label Cy3, Cy5
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Description normal whole blood sample
Data processing BeadStudio software v3.2. The raw data (non-normalized Unmethylated and Methylated signal intensities) are not available.
Submission date Sep 26, 2012
Last update date Oct 19, 2012
Contact name Steve Horvath
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
Platform ID GPL13534
Series (1)
GSE41169 Blood DNA methylation profiles in a Dutch population

Data table header descriptions
VALUE Average Beta

Data table
ID_REF VALUE Intensity
cg00000029 0.3861332 5424
cg00000108 0.9544898 16226
cg00000109 0.9134372 8183
cg00000165 0.1550871 6161
cg00000236 0.6571689 8674
cg00000289 0.6229295 2979
cg00000292 0.8276511 13187
cg00000321 0.2108819 16478
cg00000363 0.3640486 20411
cg00000622 0.005169603 25047
cg00000658 0.8134652 12332
cg00000714 0.1687166 30063
cg00000721 0.9444767 10238
cg00000734 0.05606364 18379
cg00000769 0.04085902 16151
cg00000807 0.8385928 24744
cg00000884 0.7986609 8264
cg00000905 0.05889571 11310
cg00000924 0.4833782 23664
cg00000948 0.8859836 18678

Total number of rows: 485577

Table truncated, full table size 12800 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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