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Sample GSM1009739 Query DataSets for GSM1009739
Status Public on Oct 19, 2012
Title genomic DNA from whole blood 85
Sample type genomic
Source name whole blood 85
Organism Homo sapiens
Characteristics gender: Female
sample type: whole blood
plate: PLATE A
sentrix barcode: 5773467019
sentrix position: R01C02
well id: G01
age: 29
diseasestatus (1=control, 2=scz patient): 1
used_in_analysis: yes
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from fresh frozen tissue using Qiagen DNeasy Kit according to standard instructions
Label Cy3, Cy5
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Description normal whole blood sample
Data processing BeadStudio software v3.2. The raw data (non-normalized Unmethylated and Methylated signal intensities) are not available.
Submission date Sep 26, 2012
Last update date Oct 19, 2012
Contact name Steve Horvath
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
Platform ID GPL13534
Series (1)
GSE41169 Blood DNA methylation profiles in a Dutch population

Data table header descriptions
VALUE Average Beta

Data table
ID_REF VALUE Intensity
cg00000029 0.5171531 3806
cg00000108 0.935767 17788
cg00000109 0.865419 9411
cg00000165 0.165429 6229
cg00000236 0.6517777 10982
cg00000289 0.557362 3160
cg00000292 0.8126733 20100
cg00000321 0.2743065 15040
cg00000363 0.3723169 21610
cg00000622 0.006173747 20309
cg00000658 0.863856 11285
cg00000714 0.2405051 29600
cg00000721 0.9158477 13637
cg00000734 0.05807075 17482
cg00000769 0.03869085 15666
cg00000807 0.8191576 24496
cg00000884 0.7818279 7362
cg00000905 0.0741253 12190
cg00000924 0.4919315 24068
cg00000948 0.9007528 18762

Total number of rows: 485577

Table truncated, full table size 12799 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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