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Sample GSM1009738 Query DataSets for GSM1009738
Status Public on Oct 19, 2012
Title genomic DNA from whole blood 84
Sample type genomic
Source name whole blood 84
Organism Homo sapiens
Characteristics gender: Male
sample type: whole blood
plate: PLATE A
sentrix barcode: 5773467020
sentrix position: R05C02
well id: G03
age: 20
diseasestatus (1=control, 2=scz patient): 2
used_in_analysis: yes
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from fresh frozen tissue using Qiagen DNeasy Kit according to standard instructions
Label Cy3, Cy5
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Description normal whole blood sample
Data processing BeadStudio software v3.2. The raw data (non-normalized Unmethylated and Methylated signal intensities) are not available.
Submission date Sep 26, 2012
Last update date Oct 19, 2012
Contact name Steve Horvath
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
Platform ID GPL13534
Series (1)
GSE41169 Blood DNA methylation profiles in a Dutch population

Data table header descriptions
VALUE Average Beta

Data table
ID_REF VALUE Intensity
cg00000029 0.4277008 6463
cg00000108 0.9441939 23625
cg00000109 0.8721663 11634
cg00000165 0.1241005 7821
cg00000236 0.6672736 13629
cg00000289 0.5654959 4427
cg00000292 0.8347096 22666
cg00000321 0.2291589 18721
cg00000363 0.3498238 29412
cg00000622 0.009604556 31864
cg00000658 0.8761079 15357
cg00000714 0.2361077 40462
cg00000721 0.9050389 15201
cg00000734 0.0514348 25583
cg00000769 0.0374256 23253
cg00000807 0.8068669 35549
cg00000884 0.8426168 10600
cg00000905 0.06342766 18630
cg00000924 0.4628977 35666
cg00000948 0.8989022 27319

Total number of rows: 485577

Table truncated, full table size 12855 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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