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Sample GSM1009737 Query DataSets for GSM1009737
Status Public on Oct 19, 2012
Title genomic DNA from whole blood 83
Sample type genomic
Source name whole blood 83
Organism Homo sapiens
Characteristics gender: Male
sample type: whole blood
plate: PLATE A
sentrix barcode: 5773475014
sentrix position: R04C02
well id: B05
age: 27
diseasestatus (1=control, 2=scz patient): 2
used_in_analysis: yes
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from fresh frozen tissue using Qiagen DNeasy Kit according to standard instructions
Label Cy3, Cy5
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Description normal whole blood sample
Data processing BeadStudio software v3.2. The raw data (non-normalized Unmethylated and Methylated signal intensities) are not available.
Submission date Sep 26, 2012
Last update date Oct 19, 2012
Contact name Steve Horvath
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
Platform ID GPL13534
Series (1)
GSE41169 Blood DNA methylation profiles in a Dutch population

Data table header descriptions
VALUE Average Beta

Data table
ID_REF VALUE Intensity
cg00000029 0.4542137 5928
cg00000108 0.9382515 22022
cg00000109 0.8728827 12416
cg00000165 0.1308028 7461
cg00000236 0.6365517 14400
cg00000289 0.5822233 4029
cg00000292 0.8435691 18381
cg00000321 0.2469909 18261
cg00000363 0.363778 24940
cg00000622 0.01436173 32974
cg00000658 0.8561318 15442
cg00000714 0.1937189 37919
cg00000721 0.9332101 17208
cg00000734 0.0501234 22185
cg00000769 0.03204112 23245
cg00000807 0.8237628 33162
cg00000884 0.8521524 11236
cg00000905 0.06686432 15753
cg00000924 0.5136316 33535
cg00000948 0.8937879 26912

Total number of rows: 485577

Table truncated, full table size 12853 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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